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Schema
Citing CMDGA
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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
2
HiC
2
RNA-seq
2
scRNA-seq
1
ATAC-seq
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
21
retina
16
monocyte
15
CD14-positive monocyte
10
neural progenitor cell
10
pituitary stalk
9
pericyte cell
7
adipocyte
7
kidney
6
dendritic cell
6
embryonic stem cell
6
glutamatergic neuron
6
islet of Langerhans
6
smooth muscle cell
5
CD4-positive helper T cell
5
CD8-positive, alpha-beta T cell
5
SGBS preadipocytes
5
chondrocyte
5
coronary artery
5
liver
4
adipose tissue
4
astrocyte
4
fibroblast
3
B cell
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
gabaergic neuron
3
memory B cell
3
osteoblast
3
subcutaneous adipose tissue
2
BJAB cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adipose-derived stem cell
2
adrenal gland
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enteric smooth muscle cell
2
gamma-delta T cell
2
heart left ventricle
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
oligodendrocyte
2
pancreas
2
plasma cell
2
regulatory T cell
2
right atrium auricular region
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
spleen
2
stomach
2
thoracic aorta
2
tibial artery
2
tibial nerve
2
trophoblast cell
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
B cell, CD19-positive
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Heart fetal (cardiac muscle cell)
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
alveolar macrophage
1
basal cell
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
ciliated cell
1
colon goblet cell
1
common myeloid progenitor, CD34-positive
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
enteric neuron
1
erythroblast
1
excitatory neuron
1
fat cell
1
fibroblast of arm
1
fibroblast of cardiac tissue
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
heart
1
hippocampal neuron
1
iPS DF 19.11
1
immature natural killer cell
1
induced pluripotent stem cell
1
intestinal tuft cell
1
kidney interstitial cell
1
large intestine
1
lower motor neuron
1
luteal cell
1
mast cell
1
mature NK T cell
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
mesenchymal stem cell
1
mesendoderm
1
microglial cell
1
microglial cell/astrocyte
1
muscle of leg
1
muscle of trunk
1
myeloid dendritic cell
1
myotube
1
naive t cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
non-neuronal cell
1
oligodendrocyte precursor cell
1
omental fat pad
1
ovary
1
placenta
1
plasmacytoid dendritic cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
psoas muscle
1
regular atrial cardiac myocyte
1
schwann cell
1
sigmoid colon
1
skeletal muscle fibroblast
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
skin fibroblast
1
small intestine
1
spinal cord
1
stromal cell
1
thymus
1
thyroid gland
1
transverse colon
1
type I muscle cell
1
type II muscle cell
1
uterine smooth muscle cell
1
uterus
1
ventricular cardiac muscle cell
1
white adipose tissue
Date released
1
May, 2020
Software used
1
deltasvm
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
organ_slims!
epithelium
Showing 1 of 1 results
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Download
FileSet
DSR008HPH
released
Annotation file set
: Genetic variants with deltaSVM prediction in cardiomyocyte ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP