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Schema
Citing CMDGA
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Annotation type
7
gene expression
1
eQTL
Annotation Category
7
Gene expression levels
1
Genetic variant effects
Annotation type Category
7
RNA-seq
1
scRNA-seq
Available data
7
tsv
1
txt
File set status
8
released
Genome assembly (visualization)
hg19
4
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
20
islet of Langerhans
19
monocyte
16
induced pluripotent stem cell
11
cardiomyocytes
10
macrophage
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
9
regulatory T cell
8
H1-hESC
8
T-helper 1 cell
8
T-helper 17 cell
8
neural progenitor cell
8
subcutaneous adipose tissue
7
kidney
6
kidney interstitial cell
6
lymphoblastoid cell line
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
mesangial cell
5
pancreatic stellate cell
4
T-helper 2 cell
4
adipose tissue
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
gamma-delta T cell
4
liver
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
putamen
4
visceral abdominal adipose tissue
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
T follicular helper cell
3
adult endothelial progenitor cell
3
blood cell
3
brain
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
frontal cortex
3
heart
3
kidney cell
3
kidney resident macrophage
3
memory B cell
3
naive B cel
3
natural killer cell
3
omental fat pad
3
pancreatic quiescent stellate cell
3
right atrium auricular region
3
skin of body
3
smooth muscle cell of the coronary artery
3
substantia nigra
3
tibial nerve
2
B cell
2
CD4-positive helper T cell
2
Kupffer cell
2
T cell
2
adipose-derived stem cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
body of pancreas
2
differentiating adipose-derived stem cell
2
dorsolateral prefrontal cortex
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
embryonic stem cell
2
fibroblast
2
heart left ventricle
2
hepatic stellate cell
2
hypothalamus
2
iPSC derived cell line
2
lung
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
minor salivary gland
2
muscle
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
nucleus accumbens
2
osteoblast
2
ovary
2
retina
2
skeletal muscle myoblast
2
spleen
2
stomach
2
testis
2
tibial artery
2
uterus
2
vagina
2
vascular associated smooth muscle cell
1
Ammon's horn
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
HepG2
1
Leydig cell
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Schwann cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
adipocyte
1
alpha-beta T cell
1
alternatively activated macrophage
1
aorta
1
aorta wall
1
aortic valve
1
ascending aorta
1
astrocyte
1
bladder
1
breast
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle fibroblast
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
cortex of kidney
1
cytotoxic T cell
1
dendritic cell
1
diencephalon
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
erythroid lineage cell
1
esophagus
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
esophagus mucosa
1
esophagus muscularis mucosa
1
excitatory neuron
1
fallopian tube
1
fat cell
1
fibroblast of the aortic adventitia
1
gastrocnemius medialis(Muscle - Skeletal)
1
globus pallidus
1
heart right ventricle
1
helper T cell
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
inflammatory macrophage
1
intermediate cardiomyocytes
1
intermediate smooth muscle cell
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
layer of hippocampus
1
left cardiac atrium
1
left renal cortex interstitium
1
left ventricle myocardium
1
leukocyte
1
lower motor neuron
1
mast cell
Life stage
4
adult
Date released
4
February, 2024
2
May, 2021
1
August, 2021
1
January, 2022
Software used
7
r
1
qTLtools
1
seurat
Lab
7
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
8
AMP
RFA
7
AMP
1
AMP2
organ_slims!
epithelium
assembly!
hg19
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR742CPO
released
Annotation file set
: Th17 memory eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746ZXQ
released
Annotation file set
: Gene expression annotation for RNA-seq of PRJEB11844 for T-helper 17 cell from NSCLC Squamous Cell Carcinoma
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR221JRJ
released
Annotation file set
: Gene expression annotation for RNA-seq of PRJEB11844 for T-helper 17 cell from CRC Adenocarcinoma
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266DKI
released
Annotation file set
: Gene expression annotation for RNA-seq of PRJEB11844 for T-helper 17 cell from CRC Healthy Tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR151QDV
released
Annotation file set
: Gene expression annotation for BLUEPRINT study of ncRNA-seq of EBI:E-MTAB-2319 for CD4 Th17(CD4+ CCR6+ CD161+ CXCR3-)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR697RBE
released
Annotation file set
: GSE118165 gene expression annotation of normal T-helper 17 cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188AGA
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated T-helper 17 cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR650ZIF
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for T-helper 17 cell
Lab:
Katalin Susztak, Upenn
Project:
AMP