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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
2
accessible chromatin
1
gene expression
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
16
fibroblast
12
excitatory neuron
12
macrophage
10
pericyte cell
8
smooth muscle cell
7
astrocyte
7
kidney
6
T cell
5
erythroblast
5
inhibitory neuron
5
skeletal muscle fiber
4
B cell
4
pancreatic stellate cell
4
skeletal muscle satellite cell
2
CD8-positive, alpha-beta T cell
2
Muller cell
2
adipocyte
2
basal cell
2
blood vessel smooth muscle cell
2
ciliated cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
natural killer cell
2
oligodendrocyte precursor cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
type I muscle cell
2
type II muscle cell
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
colon goblet cell
1
conventional dendritic cell
1
embryonic stem cell
1
endothelial cell of artery
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
hepatic stellate cell
1
hepatoblast
1
intestinal tuft cell
1
islet of Langerhans
1
kidney interstitial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
leukocyte
1
liver
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mast cell
1
mature NK T cell
1
melanocyte
1
mesenchymal stem cell
1
metanephros
1
microglial cell
1
monocyte
1
myofibroblast cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-classical monocyte
1
oligodendrocyte
1
pancreatic immune cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
plasma cell
1
plasmacytoid dendritic cell
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
regulatory T cell
1
retinal bipolar neuron
1
skeletal muscle fibroblast
1
skin fibroblast
1
stellate neuron
1
stromal cell
1
sympathetic neuron
1
tissue-resident macrophage
1
trophoblast giant cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Date released
1
January, 2021
1
November, 2021
Software used
2
macs
Lab
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
1
ENCODE
1
T1D
RFA
1
ENCODE3
1
T1D
organ_slims!
epithelium
lab.title!
AMP-T2D consortium
Showing 2 of 2 results
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D