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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
26
target gene predictions
12
candidate regulatory elements
10
chromatin state
3
accessible chromatin
3
gene expression
2
binding sites
1
eQTL
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
ChIP-seq
1
DNase-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
24
retina
19
monocyte
18
fibroblast
14
macrophage
14
neural progenitor cell
13
excitatory neuron
11
kidney
10
pericyte cell
9
breast cancer cell
9
embryonic stem cell
9
islet of Langerhans
9
smooth muscle cell
8
B cell
8
astrocyte
8
osteoblast
7
T cell
7
adipocyte
7
erythroblast
7
fibroblast cell line
7
melanoma
6
SGBS preadipocytes
6
chondrocyte
6
glutamatergic neuron
6
heart
6
pancreas
6
regulatory T cell
5
CD8-positive, alpha-beta T cell
5
HepG2
5
cardiac muscle cell
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
inhibitory neuron
5
liver
5
prostate cancer cell line
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
MCF-7
4
Rh-4 cell
4
acute myeloid leukemia
4
dermal fibroblast
4
glioblastoma multiforme cancer stem cell
4
hepatic stellate cell
4
memory B cell
4
mesenchymal stem cell
4
natural killer cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
skin fibroblast
4
spinal cord
3
cardiac fibroblast
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
ECC-1
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
IMR-90
3
Jurkat
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
RS4-11 cell
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
adipose tissue
3
adipose-derived stem cell
3
aortic adventitial fibroblast
3
brain
3
coronary artery
3
diffuse intrinsic pontine glioma
3
erythroid cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
gabaergic neuron
3
glial cell
3
heart left ventricle
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
plasma cell
3
primordial germ cell
3
prostate gland
3
renal epithelial cell
3
right atrium auricular region
3
spleen
3
stomach
3
synovial sarcoma cell
3
tibial artery
3
tibial nerve
3
triple-negative breast cancer
3
type I muscle cell
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
Ammon's horn
2
B-lymphocyte
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
D341 Med cell
2
DND-41 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM08714
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM13976
2
GM13977
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM20000
2
GM23248
2
GP5d
2
HAP-1
2
HEK293-T-REx cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
2
HuH-7
2
Ishikawa
2
KARPAS-422 cell
2
KBM-7
2
Kasumi-1
2
L-1236 cell
2
L-428 cell
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Muller cell
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
Organ
3
blood
3
bodily fluid
Date released
2
May, 2020
1
February, 2021
1
June, 2020
1
October, 2022
Software used
2
macs
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
epithelium
Showing 5 of 5 results
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Download
FileSet
DSR190KUB
released
Annotation file set
: Binding sites annotation for K562 (K562) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044RQC
released
Annotation file set
: Binding sites annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191JBF
released
Annotation file set
: Accessible chromatin annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR771TTS
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal T-helper 2 cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR947BYY
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated T-helper 2 cell
Lab:
AMP-T2D consortium
Project:
AMP