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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
18
chromatin state
16
target gene predictions
3
histone modifications
2
accessible chromatin
2
eQTL
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bigWig
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
33
monocyte
24
retina
18
islet of Langerhans
17
kidney
17
neural progenitor cell
16
fibroblast
15
macrophage
14
excitatory neuron
12
regulatory T cell
11
cardiomyocytes
11
smooth muscle cell
10
B cell
10
T-helper 1 cell
10
pericyte cell
9
H1-hESC
9
T-helper 17 cell
9
astrocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
CD8-positive, alpha-beta T cell
8
adipocyte
8
heart
7
T cell
7
embryonic stem cell
7
kidney interstitial cell
7
memory B cell
7
mesangial cell
7
osteoblast
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
subcutaneous adipose tissue
6
SGBS preadipocytes
6
gamma-delta T cell
6
glutamatergic neuron
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
natural killer cell
6
pancreatic stellate cell
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
inhibitory neuron
5
liver
5
pancreas
5
right atrium auricular region
5
tibial nerve
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of cardiac tissue
4
frontal cortex
4
heart left ventricle
4
hepatic stellate cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesenchymal stem cell
4
naive B cell
4
nephron progenitor
4
omental fat pad
4
stomach
4
tibial artery
4
type I muscle cell
4
type II muscle cell
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Fibroblast
3
M2 Macrophage
3
Mast Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
cerebellum
3
gabaergic neuron
3
glial cell
3
kidney cell
3
kidney resident macrophage
3
naive regulatory T cell
3
occipital lobe
3
plasma cell
3
putamen
3
skeletal muscle myoblast
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
spleen
2
CD4-positive helper T cell
2
HepG2
2
Kupffer cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
cardiac muscle cell
2
ciliated cell
2
differentiating adipose-derived stem cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
globus pallidus
2
heart right ventricle
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
left cardiac atrium
2
lower motor neuron
2
mast cell
2
medulla oblongata
2
megakaryocyte
2
metanephros
2
midbrain
2
muscle of leg
2
myeloid dendritic cell
2
naive B cel
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neural cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
ovary
2
plasmacytoid dendritic cell
2
pons
2
renal pelvis
2
schwann cell
2
smooth muscle cell of the esophagus
2
spinal cord
2
superior temporal gyrus
2
testis
2
uterus
2
vascular associated smooth muscle cell
2
visceral abdominal adipose tissue
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
Organ
3
brain
Life stage
2
fetal
Date released
1
February, 2020
1
January, 2020
1
June, 2020
Software used
2
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
organ_slims!
epithelium
Showing 3 of 3 results
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Download
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP