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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
83
heart
82
stomach
68
kidney
68
lung
67
brain
66
muscle of arm
64
HeLa-S3
62
small intestine
61
adrenal gland
59
A549
56
muscle of leg
56
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
51
H1-hESC
45
thymus
44
right lung
42
liver
42
right kidney
40
hematopoietic multipotent progenitor cell
39
renal cortex interstitium
38
K562
38
islet of Langerhans
38
renal pelvis
37
B cell
36
left kidney
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spinal cord
30
heart left ventricle
30
spleen
29
adipose tissue
26
monocyte
24
body of pancreas
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
sigmoid colon
22
tibial nerve
21
MCF-7
21
T-helper 17 cell
21
neural progenitor cell
21
trophoblast cell
19
HFFc6
19
adipocyte
19
caudate nucleus
19
mononuclear cell
19
natural killer cell
19
ovary
19
psoas muscle
18
CD8-positive, alpha-beta T cell
18
coronary artery
18
heart right ventricle
18
subcutaneous adipose tissue
17
T cell
17
T-helper 2 cell
17
macrophage
17
muscle of trunk
17
substantia nigra
17
thyroid gland
17
transverse colon
H9
16
chorionic villus
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
omental fat pad
16
right atrium auricular region
15
ascending aorta
15
endocrine pancreas
15
retina
15
skeletal muscle tissue
15
smooth muscle cell
15
tibial artery
14
CD4-positive, alpha-beta T cell
14
cerebellum
14
foreskin fibroblast
14
frontal cortex
14
layer of hippocampus
14
mesenchymal stem cell
14
pancreas
14
testis
13
GM12878
13
Peyer's patch
13
aorta
13
fibroblast
13
neurosphere
13
neutrophil
12
cardiac muscle cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
skeletal muscle myoblast
12
temporal lobe
12
upper lobe of left lung
11
cardiomyocytes
11
pericyte cell
11
putamen
10
Ammon's horn
10
SK-N-SH
10
angular gyrus
10
esophagus
10
esophagus muscularis mucosa
10
fibroblast of cardiac tissue
10
left cardiac atrium
10
right renal cortex interstitium
9
HepG2
9
chorion membrane
9
cingulate gyrus
9
colonic mucosa
9
duodenal mucosa
9
endometrium adenocarcinoma
9
extended pluripotent stem (EPS) cells
9
left renal pelvis
9
lower leg skin
9
lymphocyte
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
9
vagina
8
22Rv1
8
SK-N-DZ
8
astrocyte
8
cardiomyocytes (cardiac muscle cell)
8
endodermal cell
8
eye
8
fibroblast of breast
8
immortal human breast epithelial cell line cell
8
naive T cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
prostate gland
8
skeletal muscle satellite cell
8
tongue
7
LNCaP clone FGC
7
T47D
7
WI38
7
dendritic cell
7
embryonic stem cell
7
limb
7
right lobe of liver
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
T-cell
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
erythroblast
6
gamma-delta T cell
6
gastroesophageal sphincter
6
hypothalamus
6
iPSC derived cell line
6
lymphoblastoid cell line
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
osteoblast
6
uterus
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
GM06990
5
GM08714
5
GM12864
5
GM12865
5
GM12875
5
GM19238
5
GM19239
5
GM19240
5
HAP-1
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
M2 Macrophage
5
MM.1S
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
NB4
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
Life stage
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
organ_slims!
epithelium
biosample_term_name!
H9
software_used.software.name!
macs
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP