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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
1
gene expression
Annotation Category
3
Target gene links
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
snATAC-seq
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
scRNA-seq
Available data
5
bed bed3+
2
bigWig
1
tsv
1
txt
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
in vitro differentiated cells
Biosample term
26
fibroblast
19
macrophage
19
pericyte cell
19
smooth muscle cell
15
CD14-positive monocyte
15
kidney
12
adipocyte
12
excitatory neuron
10
astrocyte
10
pituitary stalk
9
pancreatic stellate cell
9
skeletal muscle fiber
8
T cell
8
induced pluripotent stem cell
7
CD8-positive, alpha-beta T cell
7
dendritic cell
6
erythroblast
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
B cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
inhibitory neuron
5
left cardiac atrium
5
mesenchymal stem cell
5
natural killer cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
liver
4
memory B cell
4
myofibroblast cell
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
smooth muscle cell of the esophagus
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
ciliated cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
glial cell
3
mast cell
3
megakaryocyte
3
monocyte
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
schwann cell
3
subcutaneous adipose tissue
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
articular chondrocyte
2
cardiac muscle cell
2
colon goblet cell
2
conventional dendritic cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of lung
2
intestinal tuft cell
2
leukocyte
2
luteal cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non-classical monocyte
2
oligodendrocyte
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
stellate neuron
2
stomach
2
stromal cell
2
trophoblast cell
2
uterine smooth muscle cell
2
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
adipose tissue
1
alternatively activated macrophage
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
cardiac ventricle
1
caudate nucleus
1
cell
1
cingulate gyrus
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
duodenal mucosa
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of dermis
1
foreskin fibroblast
1
gastrocnemius medialis
1
hepatic stellate cell
1
hepatoblast
1
iPS DF 19.11
1
inflammatory macrophage
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
large intestine
1
layer of hippocampus
1
lymphocyte of B lineage
Life stage
1
adult
Date released
2
January, 2021
2
May, 2021
1
April, 2020
1
August, 2021
Software used
2
abc
1
cicero
1
macs
1
r
1
seurat
Lab
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
2
Kyle Gaulton, UCSD
1
Katalin Susztak, Upenn
1
Xin Sun, UCSD
Project
3
AMP
2
T1D
1
LungMap
RFA
2
AMP
2
T1D
1
AMP2
1
LungMap2
organ_slims!
epithelium
lab.title!
AMP-T2D consortium
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR382SMZ
released
Annotation file set
: ATAC-seq peaks in NK cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR962TNF
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for natural killer cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR598LAB
released
Annotation file set
: enhancer-gene predicton of natural_killer_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397SUR
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of adaptive_NK
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR197KBT
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of adaptive_NK
Lab:
Kyle Gaulton, UCSD
Project:
T1D