Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
131
monocyte
67
heart
67
stomach
63
kidney
60
HeLa-S3
54
brain
52
lung
51
H1-hESC
50
CD8-positive, alpha-beta T cell
50
muscle of arm
48
adrenal gland
48
small intestine
47
neural progenitor cell
46
placenta
43
A549
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
islet of Langerhans
41
muscle of back
40
liver
39
left lung
37
thymus
36
B cell
36
retina
34
right lung
33
K562
33
hematopoietic multipotent progenitor cell
32
macrophage
32
right kidney
31
fibroblast
30
renal cortex interstitium
30
renal pelvis
28
spleen
27
CD14-positive monocyte
27
left kidney
27
spinal cord
25
regulatory T cell
24
adipose tissue
24
heart left ventricle
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
21
pericyte cell
20
MCF-7
20
adipocyte
20
breast cancer cell
20
natural killer cell
20
tibial nerve
19
HFFc6
19
T-helper 1 cell
19
body of pancreas
19
subcutaneous adipose tissue
18
T cell
18
T-helper 17 cell
17
ovary
17
sigmoid colon
17
trophoblast cell
16
astrocyte
16
induced pluripotent stem cell
16
pancreas
15
CD8-positive, alpha-beta memory T cell
15
H9
15
coronary artery
15
foreskin fibroblast
15
mesenchymal stem cell
15
psoas muscle
15
right atrium auricular region
15
transverse colon
14
HepG2
14
caudate nucleus
14
gastrocnemius medialis
14
mononuclear cell
14
omental fat pad
14
osteoblast
14
testis
14
thyroid gland
13
GM12878
13
T-helper 2 cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
heart right ventricle
13
neutrophil
13
skeletal muscle tissue
13
substantia nigra
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
cardiac muscle cell
12
cerebellum
12
embryonic stem cell
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
12
putamen
12
tibial artery
11
ascending aorta
11
chorionic villus
11
frontal cortex
11
skeletal muscle myoblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
endocrine pancreas
10
gastric cancer cell
10
left renal cortex interstitium
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
skeletal muscle satellite cell
9
Ammon's horn
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
fibroblast of lung
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
esophagus
8
fibroblast cell line
8
pituitary stalk
8
right renal pelvis
8
skeletal muscle fiber
8
trophoblast
7
CD4-positive helper T cell
7
HAP-1
7
HT-29
7
Jurkat
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
extended pluripotent stem (EPS) cells
7
fibroblast of dermis
7
hepatic stellate cell
7
left renal pelvis
7
lower leg skin
7
memory B cell
7
mesendoderm
7
temporal lobe
7
thoracic aorta
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
GM23248
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
NAMALWA cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
endometrium adenocarcinoma
6
erythroblast
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
right renal cortex interstitium
6
smooth muscle cell of the coronary artery
6
tongue
6
type I muscle cell
6
uterus
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
BE(2)-C
5
BJ cell
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
CyT49
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Vascular Smooth Muscle Cell
5
Ewing sarcoma
5
Fibroblast
5
GM10248
5
GM10266
5
GM12875
5
GM18507
5
GM19238
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
epithelium
month_released!
January, 2020
software_used.software.name!
chromhmm
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP