Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
3
binding sites
2
histone modifications
1
gene expression
1
target gene predictions
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ATAC-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
6
in vitro differentiated cells
Biosample term
22
retina
16
fibroblast
16
monocyte
13
excitatory neuron
12
macrophage
10
neural progenitor cell
10
pericyte cell
9
kidney
9
smooth muscle cell
8
astrocyte
6
B cell
6
T cell
6
embryonic stem cell
6
glutamatergic neuron
6
islet of Langerhans
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
memory B cell
4
pancreatic stellate cell
3
cardiac fibroblast
3
coronary artery
3
gabaergic neuron
3
heart
3
heart left ventricle
3
liver
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
osteoblast
3
pancreas
3
regulatory T cell
3
type I muscle cell
3
type II muscle cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
basal cell
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
glial cell
2
hepatic stellate cell
2
leukocyte
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
naive regulatory T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
plasma cell
2
plasmacytoid dendritic cell
2
right atrium auricular region
2
schwann cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain
1
brain pericyte
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell of artery
1
erythrocyte
1
extravillous trophoblast
1
fetal heart
1
fetal thymocyte
1
forelimb muscle
1
frontal cortex
1
globus pallidus
1
heart right ventricle
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney interstitial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mast cell
1
mature NK T cell
1
medulla oblongata
1
melanocyte
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
myeloid dendritic cell
1
myofibroblast cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuron cell of Hypothalamus (neuron)
1
non-classical monocyte
1
non-neuronal cell
1
occipital lobe
1
pancreatic immune cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
pons
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
proximal tubule cells with injury markers
1
putamen
1
regular atrial cardiac myocyte
1
renal cortex interstitium
1
renal pelvis
1
retinal bipolar neuron
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle fibroblast
1
skeletal muscle myoblast
1
skin fibroblast
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
spleen
1
stellate neuron
1
stromal cell
1
superior temporal gyrus
1
sympathetic neuron
1
thoracic aorta
1
tissue-resident macrophage
1
trophoblast giant cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Date released
5
May, 2021
1
November, 2022
Software used
6
macs
Lab
5
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
6
AMP
RFA
5
AMP
1
AMP2
organ_slims!
epithelium
month_released!
June, 2020
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP