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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
52
HeLa-S3
47
H1-hESC
42
monocyte
38
islet of Langerhans
26
retina
20
macrophage
19
HFFc6
19
kidney
18
K562
18
neural progenitor cell
18
subcutaneous adipose tissue
17
induced pluripotent stem cell
17
liver
15
CD14-positive monocyte
15
regulatory T cell
13
coronary artery
12
adipocyte
12
adipose tissue
12
right atrium auricular region
12
tibial nerve
11
CD8-positive, alpha-beta T cell
11
T-helper 1 cell
11
cardiomyocytes
11
heart
11
tibial artery
10
T-helper 17 cell
10
fibroblast
10
frontal cortex
10
pancreas
10
pancreatic stellate cell
10
pituitary stalk
10
putamen
9
B cell
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
natural killer cell
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
smooth muscle cell
8
Ammon's horn
8
GM12878
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
embryonic stem cell
8
mesenchymal stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
osteoblast
7
H9
7
T cell
7
ascending aorta
7
dendritic cell
7
kidney interstitial cell
7
lymphoblastoid cell line
7
memory B cell
7
stomach
7
substantia nigra
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
6
skeletal muscle fiber
6
spleen
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
HUES8
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Vascular Smooth Muscle Cell / Pericyte
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
left ventricle myocardium
5
mesangial cell
5
neutrophil
5
ovary
5
psoas muscle
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
5
type I muscle cell
5
type II muscle cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
glutamatergic neuron
4
hepatic stellate cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
nephron progenitor
4
occipital lobe
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle satellite cell
4
small intestine
4
spinal cord
4
thymus
4
uterus
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
Cycling Mononuclear Phagocyte
3
Jurkat
3
Mast Cell
3
U937
3
activated CD8-positive, alpha-beta T cell
3
aorta
3
astrocyte
3
basal cell
3
blood cell
3
brain pericyte
3
dorsolateral prefrontal cortex
3
globus pallidus
3
kidney cell
3
kidney resident macrophage
3
left cardiac atrium
3
lung
3
medulla oblongata
3
megakaryocyte
3
mesendoderm
3
midbrain
3
muscle of leg
3
naive B cel
3
naive regulatory T cell
3
pancreatic quiescent stellate cell
3
placenta
3
plasmacytoid dendritic cell
3
pons
3
renal pelvis
3
sigmoid colon
3
skeletal muscle tissue
3
skin of body
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
3
trophoblast cell
2
hindlimb muscle
2
muscle of leg
2
A549
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
Date released
1
June, 2020
1
March, 2020
1
May, 2021
Software used
1
abc
1
macs
1
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
organ_slims!
epithelium
month_released!
November, 2021
annotation_type_category!
ChIP-seq
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP