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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
131
monocyte
89
heart
86
stomach
81
kidney
73
brain
67
lung
67
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
50
neural progenitor cell
49
CD8-positive, alpha-beta T cell
47
liver
47
thymus
45
right lung
43
hematopoietic multipotent progenitor cell
42
right kidney
41
B cell
41
K562
41
islet of Langerhans
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
31
CD14-positive monocyte
30
adipose tissue
28
regulatory T cell
26
MCF-7
25
adipocyte
23
T-helper 1 cell
23
natural killer cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
macrophage
22
sigmoid colon
22
tibial nerve
21
T-helper 17 cell
21
body of pancreas
20
breast cancer cell
20
mononuclear cell
19
caudate nucleus
19
foreskin fibroblast
19
ovary
19
pancreas
18
HFFc6
18
T cell
18
gastrocnemius medialis
18
subcutaneous adipose tissue
18
thyroid gland
18
transverse colon
17
T-helper 2 cell
17
cardiac muscle cell
17
coronary artery
17
embryonic stem cell
17
heart right ventricle
17
mesenchymal stem cell
17
muscle of trunk
17
osteoblast
17
psoas muscle
17
testis
16
GM12878
16
chorionic villus
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
right atrium auricular region
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
H9
15
HepG2
15
neutrophil
15
substantia nigra
15
tibial artery
14
endocrine pancreas
14
prostate gland
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
fibroblast of cardiac tissue
13
neurosphere
13
smooth muscle cell
13
temporal lobe
12
fibroblast
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
omental fat pad
11
ascending aorta
11
cerebellum
11
frontal cortex
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
aorta
10
esophagus muscularis mucosa
10
gastric cancer cell
10
lymphocyte
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
9
HEK293
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
hepatic stellate cell
9
liposarcoma
9
parathyroid adenoma
9
putamen
9
skeletal muscle satellite cell
9
tongue
9
trophoblast
9
vagina
8
Ammon's horn
8
GM06990
8
GM12864
8
GM12865
8
HT-29
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
duodenal mucosa
8
endodermal cell
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
B-lymphoblastoid cell line
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
skin fibroblast
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12875
6
GM19240
6
GM23248
6
HAP-1
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
astrocyte
6
chondrocyte
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
epithelium
month_released!
November, 2021
March, 2020
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP