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Schema
Citing CMDGA
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Annotation type
10
accessible chromatin
8
candidate regulatory elements
8
eQTL
6
binding sites
6
histone modifications
5
target gene predictions
3
Fine-mapped variants
3
chromatin state
3
gene expression
1
caQTL
1
differential activity
1
variant allelic effects
Annotation Category
5
Target gene links
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
pCHi-C
1
HiC
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
tissue
2
cell line
Biosample term
3
liver
2
HepG2
Organ
epithelium
57
embryo
54
uterus
38
connective tissue
32
blood
32
bodily fluid
30
pancreas
18
intestine
16
brain
13
heart
12
musculature of body
11
large intestine
10
pituitary gland
10
skin of body
8
lung
7
adrenal gland
7
liver
7
stomach
7
vasculature
6
blood vessel
5
adipose tissue
5
mammary gland
4
small intestine
3
esophagus
3
extraembryonic component
3
gonad
3
limb
3
ovary
3
thymus
2
artery
2
bone element
2
bone marrow
2
prostate gland
2
spleen
2
thyroid gland
2
vein
1
breast
1
bronchus
1
lymph node
1
lymphatic vessel
1
lymphoid tissue
1
penis
1
placenta
1
spinal cord
1
urinary bladder
Life stage
1
adult
Date released
September, 2022
3
March, 2020
2
May, 2021
Software used
2
abc
1
chicago
1
hiccups
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
organ_slims!
epithelium
month_released!
September, 2022
Showing 5 of 5 results
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Download
FileSet
DSR494KQG
released
Annotation file set
: enhancer-gene predicton of liver-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR651DDS
released
Annotation file set
: enhancer-gene predicton of HepG2-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR940SFE
released
Annotation file set
: A target gene prediction annotation in liver of DSR477FKL Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499URQ
released
Annotation file set
: A target gene prediction annotation in HepG2 of DSR452PKJ pCHi-C E-MTAB-7144
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR605JRF
released
Annotation file set
: A target gene prediction annotation in Human Liver of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP