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Schema
Citing CMDGA
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Annotation type
662
gene expression
167
differential activity
107
eQTL
16
variant allelic effects
8
accessible chromatin
6
caQTL
2
Fine-mapped variants
2
sQTL
2
variant to gene
1
binding sites
1
histone modifications
1
other
1
representative DNase hypersensitivity sites
Annotation Category
6
Genetic variant effects
Annotation type Category
3
ATAC-seq
3
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
GRCh38
hg19
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
tissue
Biosample term
2
CD4-positive helper T cell
1
coronary artery
endothelial cell
1
fibroblast of the aortic adventitia
1
macrophage
1
smooth muscle cell of the coronary artery
Organ
3
blood vessel
3
vasculature
2
artery
2
heart
1
connective tissue
Date released
4
February, 2023
2
October, 2022
Software used
4
rasqual
2
matrix-eQTL
Lab
4
AMP-T2D consortium
2
Stephen S. Rich Lab @UVA
Project
4
AMP
2
T1D
RFA
4
AMP
2
T1D
organ_slims!
extraembryonic component
assembly!
hg19
biosample_term_name!
endothelial cell
Showing 6 of 6 results
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FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR868SOF
released
Annotation file set
: Chromatin accessibility QTLs in macrophages passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR575ALX
released
Annotation file set
: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D