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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
target gene predictions
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
4
pancreatic beta cell
3
pancreatic alpha cell
2
pancreatic acinar cell
2
pancreatic delta cell
2
pancreatic ductal cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
cardiac precursors
1
conventional dendritic cell
1
endothelial cell
1
heart left ventricle
1
macrophage
1
megakaryocyte
1
memory B cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
pancreas
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
stellate neuron
Organ
4
epithelium
4
pancreas
Life stage
1
adult
1
newborn
Date released
2
January, 2021
2
November, 2021
2
October, 2019
1
February, 2024
1
September, 2022
Software used
4
macs
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
organ_slims!
extraembryonic component
Showing 4 of 4 results
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Download
FileSet
DSR478ONG
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of INSlow_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR179DUH
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of INShigh_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR112LAM
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 2 children samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR616QUT
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP