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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
2
binding sites
1
gene expression
1
histone modifications
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
Annotation type Category
12
ChIP-seq
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
4
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
128
monocyte
55
HeLa-S3
50
H1-hESC
44
islet of Langerhans
42
neural progenitor cell
41
CD8-positive, alpha-beta T cell
41
endothelial cell
32
fibroblast
30
macrophage
28
heart
28
hepatocyte
28
retina
27
liver
26
K562
25
brain
23
EndoC_BH1
23
pancreatic ductal cell
22
smooth muscle cell
22
stomach
21
A549
20
breast cancer cell
20
pericyte cell
20
pigmented layer of retina
19
B cell
19
HFFc6
19
lung
19
subcutaneous adipose tissue
18
embryonic stem cell
18
pancreatic beta cell
18
placenta
18
regulatory T cell
17
adipose tissue
17
pancreatic alpha cell
17
small intestine
16
adipocyte
16
adrenal gland
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
15
induced pluripotent stem cell
15
keratinocyte
15
muscle of arm
15
muscle of leg
15
pancreatic delta cell
14
T cell
14
heart left ventricle
14
thymus
13
astrocyte
13
excitatory neuron
13
large intestine
13
muscle of back
12
HepG2
12
T-helper 1 cell
12
T-helper 17 cell
12
common myeloid progenitor, CD34-positive
12
coronary artery
12
hematopoietic multipotent progenitor cell
12
left lung
12
neuroblastoma cell
12
tibial nerve
11
GM12878
11
lymphoblastoid cell line
11
natural killer cell
10
MCF-7
10
gastric cancer cell
10
mesenchymal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right atrium auricular region
10
right lung
10
skeletal muscle satellite cell
10
spinal cord
10
substantia nigra
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
cardiomyocytes
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
omental fat pad
9
osteoblast
9
retinal pigment epithelial cell
9
spleen
9
tibial artery
8
B-lymphoblastoid cell line
8
cerebellum
8
fibroblast cell line
8
frontal cortex
8
neutrophil
8
skeletal muscle fiber
7
Ammon's horn
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
H9
7
T-helper 2 cell
7
amygdala
7
aorta
7
ascending aorta
7
body of pancreas
7
cardiac muscle cell
7
cardiomyocytes (cardiac muscle cell)
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of cardiac tissue
7
lymphocyte
7
mammary gland epithelial cell
7
mature neutrophil
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
pancreas
7
putamen
7
temporal lobe
6
Chondroid Chordoma
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left cardiac atrium
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Ewing sarcoma
5
Fibroblast
5
GM19238
5
GM19239
5
GM19240
5
HUES8
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
SGBS preadipocytes
5
enterocyte
5
foreskin fibroblast
5
glutamatergic neuron
5
heart right ventricle
5
mammary epithelial cell
5
mast cell
5
mesangial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
smooth muscle cell of the coronary artery
5
testis
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
CD4-positive helper T cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM18505
4
GM19099
4
GM19193
4
HL-60
4
HS-SY-2 cell
4
IMR-90
4
Jurkat
4
KARPAS-422 cell
4
Mantle cell lymphoma
Life stage
2
adult
1
unknown
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
February, 2020
1
October, 2022
Software used
4
chromhmm
2
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
organ_slims!
kidney
annotation_type_category!
DNase-seq
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR738QJJ
released
Annotation file set
: Binding sites annotation for skeletal muscle myoblast (HSMM) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR584RLR
released
Annotation file set
: Chromatin states for BSS01574 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR816QKV
released
Annotation file set
: Chromatin states for BSS01573 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR711NYW
released
Annotation file set
: Histone modifications annotation for Muscle HSMM from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR469SRC
released
Annotation file set
: Binding sites annotation for Muscle HSMM from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR846HCI
released
Annotation file set
: Gene expression levels of Skeletal muscle myoblast cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR558538
released
Annotation file set
: ChromHMM 13-state model for skeletal muscle myoblast
Lab:
Stephen Parker, UMich
Project:
AMP