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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
candidate regulatory elements
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
cell line
1
stem cell
Biosample term
71
heart
65
muscle of arm
61
brain
56
lung
55
muscle of leg
54
muscle of back
54
placenta
53
stomach
52
left lung
50
kidney
47
small intestine
44
right lung
42
right kidney
38
renal cortex interstitium
38
thymus
37
renal pelvis
36
left kidney
32
adrenal gland
28
spinal cord
19
trophoblast cell
16
chorionic villus
16
muscle of trunk
13
neural progenitor cell
13
neurosphere
12
left renal cortex interstitium
12
retina
11
right renal cortex interstitium
10
left renal pelvis
10
right renal pelvis
9
H9
8
endodermal cell
8
eye
8
heart left ventricle
8
liver
8
tongue
8
trophoblast
7
limb
6
cardiac muscle cell
6
chorion membrane
6
mesodermal cell
6
skin fibroblast
5
HEK293
5
germinal matrix
5
heart right ventricle
5
left cardiac atrium
5
neural cell
5
testis
4
ELF-1
4
H1-hESC
4
HUES48
4
HUES6
4
HUES64
4
IMR-90
4
UCSF-4
4
amnion
4
ectodermal cell
4
femur
4
hepatocyte
4
islet precursor cell
4
kidney capillary endothelial cell
4
mesenchymal stem cell
4
mesendoderm
4
neuron
4
ovary
4
smooth muscle cell
4
spleen
4
umbilical cord
3
AG04449 cell
3
AG04450 cell
3
ES-I3
3
H7-hESC
3
HEK293T
3
HTR-8/Svneo
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
arm bone
3
cardiac mesoderm primordium
3
cardiac precursors (cardiac muscle cell)
3
embryonic facial prominence
3
fibroblast of cardiac tissue
3
leg bone
3
skin of body
3
urinary bladder
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
neuroepithelial stem cell
2
neuronal stem cell
2
placental basal plate
1
AG04449
1
AG04450
1
H1
1
H7
1
aorta
1
aortic valve
1
astrocyte
1
cardiac fibroblast
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
ecto neural progenitor cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
forelimb muscle
1
hindlimb muscle
1
left leg bone
1
mid-neurogenesis radial glial cells
1
mitral valve
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
radial glial cell
1
right arm bone
1
right cardiac atrium
1
tricuspid valve
Organ
4
embryo
Life stage
8
unknown
4
embryonic
Date released
3
September, 2022
1
August, 2017
Software used
2
chromhmm
2
r
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
organ_slims!
large intestine
Showing 4 of 4 results
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Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP