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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
128
monocyte
44
islet of Langerhans
41
neural progenitor cell
39
CD8-positive, alpha-beta T cell
38
kidney
34
endothelial cell
33
heart
31
retina
30
hepatocyte
28
brain
28
macrophage
27
fibroblast
25
liver
25
stomach
22
A549
22
EndoC_BH1
22
pancreatic ductal cell
20
B cell
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pigmented layer of retina
19
placenta
19
regulatory T cell
19
subcutaneous adipose tissue
18
glomerular endothelial cell
17
adipocyte
17
embryonic stem cell
17
lung
17
muscle of arm
17
small intestine
16
adipose tissue
16
adrenal gland
16
endothelial cell of hepatic sinusoid
16
heart left ventricle
16
muscle of leg
16
tibial nerve
15
T cell
15
induced pluripotent stem cell
15
pancreatic beta cell
15
smooth muscle cell
14
H1-hESC
14
coronary artery
14
pancreatic acinar cell
13
T-helper 1 cell
13
caudate nucleus
13
excitatory neuron
13
hematopoietic multipotent progenitor cell
13
keratinocyte
13
muscle of back
13
osteoblast
13
pancreatic alpha cell
13
retinal pigment epithelial cell
13
right atrium auricular region
12
HepG2
12
T-helper 17 cell
12
common myeloid progenitor, CD34-positive
12
frontal cortex
12
left lung
12
lymphoblastoid cell line
12
natural killer cell
12
neuroblastoma cell
12
spinal cord
12
thymus
12
tibial artery
11
K562
11
MCF-7
11
pericyte cell
11
renal pelvis
11
right lung
10
Rhabdomyosarcoma
10
astrocyte
10
gastric cancer cell
10
pancreas
10
pancreatic delta cell
10
progenitor cell of endocrine pancreas
10
putamen
10
right kidney
10
spleen
10
substantia nigra
9
CD4-positive, alpha-beta memory T cell
9
ascending aorta
9
body of pancreas
9
cardiac muscle cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
glomerular visceral epithelial cell
9
left cardiac atrium
9
liposarcoma
9
mesenchymal stem cell
9
omental fat pad
9
renal cortex interstitium
9
skeletal muscle myoblast
9
skeletal muscle satellite cell
8
Ammon's horn
8
cerebellum
8
pancreatic stellate cell
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
amygdala
7
erythroblast
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
foreskin fibroblast
7
hepatic stellate cell
7
left kidney
7
mammary gland epithelial cell
7
mature neutrophil
7
temporal lobe
6
Chondroid Chordoma
6
GM12878
6
anterior cingulate cortex
6
chondrocyte
6
foreskin keratinocyte
6
hESC cell
6
hypothalamus
6
mammary epithelial cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neuronal stem cell
6
neutrophil
6
nucleus accumbens
6
prostate gland
6
skeletal muscle tissue
6
testis
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
HL-60
5
IMR-90
5
Jurkat
5
KARPAS-422 cell
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Non-Classical Monocyte
5
SGBS preadipocytes
5
acute myeloid leukemia
5
bronchial epithelial cell
5
cardiac precursors (cardiac muscle cell)
5
choroid plexus epithelial cell
5
enterocyte
5
epithelial cell of prostate
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mast cell
5
memory B cell
5
mesangial cell
5
midbrain
Life stage
1
embryonic
Date released
2
February, 2021
1
June, 2020
1
September, 2022
Software used
3
macs
1
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
large intestine
annotation_type!
candidate regulatory elements
target gene predictions
Showing 4 of 4 results
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP