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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
5
accessible chromatin
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
primary cell
Biosample term
24
retina
20
pigmented layer of retina
19
monocyte
14
neural progenitor cell
11
kidney
10
endothelial cell of hepatic sinusoid
10
retinal pigment epithelial cell
9
EndoC_BH1
9
breast cancer cell
9
embryonic stem cell
8
endothelial cell
8
hepatocyte
8
islet of Langerhans
8
osteoblast
8
pancreatic ductal cell
7
fibroblast cell line
7
melanoma
6
SGBS preadipocytes
6
adipocyte
6
chondrocyte
6
heart
6
pancreas
6
pancreatic beta cell
6
regulatory T cell
5
B cell
5
HepG2
5
cardiac muscle cell
5
foreskin fibroblast
5
liver
5
macrophage
5
mammary epithelial cell
5
pancreatic alpha cell
5
prostate cancer cell line
4
CD8-positive, alpha-beta T cell
4
MCF-7
4
Rh-4 cell
4
acute myeloid leukemia
4
choroid plexus epithelial cell
4
dermal fibroblast
4
endothelial cell of umbilical vein
4
fibroblast
4
glioblastoma multiforme cancer stem cell
4
glutamatergic neuron
4
keratinocyte
4
mesenchymal stem cell
4
natural killer cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
spinal cord
3
cardiac fibroblast
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
ECC-1
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
Jurkat
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
RS4-11 cell
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
T cell
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
adipose tissue
3
adipose-derived stem cell
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
brain
3
bronchial epithelial cell
3
coronary artery
3
diffuse intrinsic pontine glioma
3
erythroid cell
3
esophageal epithelial cell
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
mammary gland epithelial cell
3
memory B cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
primordial germ cell
3
prostate gland
3
renal epithelial cell
3
right atrium auricular region
3
skin fibroblast
3
smooth muscle cell
3
spleen
3
stomach
3
synovial sarcoma cell
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
triple-negative breast cancer
2
786-O cell
2
A-673 cell
2
Ammon's horn
2
B-lymphocyte
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
D341 Med cell
2
DND-41 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM08714
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM13976
2
GM13977
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM20000
2
GM23248
2
GP5d
2
HAP-1
2
HEK293-T-REx cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
2
HuH-7
2
Ishikawa
2
KARPAS-422 cell
2
KBM-7
2
Kasumi-1
2
L-1236 cell
2
L-428 cell
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
Organ
6
connective tissue
Date released
2
February, 2024
1
February, 2021
1
June, 2020
1
November, 2022
1
October, 2019
Software used
6
macs
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
ENCODE3
organ_slims!
lung
award.rfa!
ENCODE3
Showing 6 of 6 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP