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Schema
Citing CMDGA
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Annotation type
13
accessible chromatin
13
eQTL
9
chromatin state
7
target gene predictions
4
candidate regulatory elements
3
binding sites
3
gene expression
2
Fine-mapped variants
2
histone modifications
2
sQTL
2
variant allelic effects
Annotation Category
3
Gene expression levels
Annotation type Category
2
RNA-seq
1
snRNA-seq
Available data
tsv
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
4
hepatocyte
2
islet of Langerhans
2
skeletal muscle fiber
2
skeletal muscle satellite cell
1
adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell
1
endothelial cell of coronary artery
1
epithelial cell of proximal tubule
1
glial cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
leukocyte
1
mesangial cell
1
mesenchymal cell
1
mesenchymal stem cell
1
mesenchymal stem cell of adipose
1
neural cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pericardium fibroblast
1
renal cortical epithelial cell
1
skeletal muscle myoblast
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
type I muscle cell
1
type II muscle cell
Organ
2
pancreas
1
connective tissue
Life stage
2
adult
Date released
2
May, 2021
1
February, 2024
Software used
3
r
1
deeptools
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
organ_slims!
lymph node
files.file_type!
tsv
Showing 3 of 3 results
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FileSet
DSR632ITR
released
Annotation file set
: RNA-seq of human islet pro-inflammatory cytokine exposure for GSE137136 (NO RAW DATA)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR357XYH
released
Annotation file set
: RNA-seq of human islet control for GSE137136 (NO RAW DATA)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP