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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
binding sites
1
chromatin state
target gene predictions
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
cell line
Biosample term
16
trophoblast cell
15
H1-hESC
12
chorionic villus
8
H9
8
endodermal cell
8
trophoblast
7
mesodermal cell
5
HUES6
4
H4
4
H7-hESC
4
HUES64
4
ectodermal cell
3
ELF-1
3
HUES48
3
UCSF-4
3
embryonic facial prominence
3
hESC H9
3
primordial germ cell
2
ES-I3
2
HUES8
2
cardiac mesoderm primordium
2
first pancreatic bud
1
CyT49
1
H1
1
H7
1
cardiogenic mesoderm
1
embryonic fibroblast
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
morula
1
placental hematopoietic stem cell
1
trophoblast giant cell
Organ
4
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
Software used
1
chromhmm
1
encode-ccres
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
lymph node
annotation_type!
target gene predictions
Showing 4 of 4 results
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Download
FileSet
DSR271EXL
released
Annotation file set
: Candidate regulatory elements for BSS00273 ectodermal cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR957XUP
released
Annotation file set
: Chromatin states for BSS00273 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR982BXE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE ectodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR729IJS
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_ectodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP