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Schema
Citing CMDGA
Clear Filters
Annotation type
1587
candidate regulatory elements
1276
target gene predictions
951
histone modifications
894
chromatin state
821
accessible chromatin
784
binding sites
631
gene expression
151
differential activity
150
eQTL
124
variant allelic effects
68
Fine-mapped variants
11
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
1
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
DNase-seq
Available data
3
tsv
2
bed bed3+
File set status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
in vitro differentiated cells
Biosample term
2
islet of Langerhans
2
tissue
1
myocyte
Organ
2
pancreas
Date released
2
March, 2023
1
August, 2020
1
August, 2022
1
February, 2021
Software used
2
combined S2G strategy
2
qTLtools
1
altius-index
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
lymphatic vessel
connective tissue
Showing 5 of 5 results
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FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR860BOU
released
Annotation file set
: Variant to gene predictions in 1000G
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619JSP
released
Annotation file set
: Variant to gene predictions in UK biobank
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP