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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
histone modifications
2
target gene predictions
1
accessible chromatin
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
131
monocyte
72
heart
66
kidney
65
stomach
62
HeLa-S3
60
brain
59
A549
54
H1-hESC
51
lung
50
muscle of arm
50
neural progenitor cell
49
small intestine
48
adrenal gland
48
placenta
45
islet of Langerhans
44
CD8-positive, alpha-beta T cell
44
endothelial cell
44
muscle of leg
42
large intestine
42
liver
41
B cell
40
K562
40
common myeloid progenitor, CD34-positive
39
left lung
39
muscle of back
39
thymus
37
hepatocyte
37
retina
35
fibroblast
35
macrophage
34
hematopoietic multipotent progenitor cell
34
right lung
32
right kidney
30
adipose tissue
30
renal pelvis
29
renal cortex interstitium
28
heart left ventricle
28
spinal cord
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipocyte
27
left kidney
26
regulatory T cell
26
smooth muscle cell
25
pancreatic ductal cell
25
spleen
24
pericyte cell
23
EndoC_BH1
23
natural killer cell
22
MCF-7
22
T cell
22
epithelial cell of proximal tubule
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
20
T-helper 1 cell
20
body of pancreas
20
breast cancer cell
20
caudate nucleus
20
glomerular endothelial cell
20
keratinocyte
20
pigmented layer of retina
19
coronary artery
19
mononuclear cell
19
pancreas
19
subcutaneous adipose tissue
19
trophoblast cell
18
HFFc6
18
T-helper 17 cell
18
embryonic stem cell
18
pancreatic beta cell
18
right atrium auricular region
17
mesenchymal stem cell
17
pancreatic acinar cell
17
pancreatic alpha cell
17
psoas muscle
17
sigmoid colon
17
tibial artery
16
HepG2
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
heart right ventricle
16
induced pluripotent stem cell
16
osteoblast
16
ovary
15
endothelial cell of umbilical vein
15
frontal cortex
15
mammary gland epithelial cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
substantia nigra
15
thyroid gland
14
GM12878
14
T-helper 2 cell
14
ascending aorta
14
foreskin keratinocyte
14
skeletal muscle myoblast
13
cerebellum
13
excitatory neuron
13
fibroblast of lung
13
foreskin fibroblast
13
gastrocnemius medialis
13
neutrophil
13
omental fat pad
13
testis
13
transverse colon
12
cardiac muscle cell
12
endocrine pancreas
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
neuroblastoma cell
12
putamen
12
skeletal muscle satellite cell
12
skeletal muscle tissue
11
Ammon's horn
11
aorta
11
bronchial epithelial cell
11
chorionic villus
11
erythroblast
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
hepatic stellate cell
11
prostate gland
10
Peyer's patch
10
Rhabdomyosarcoma
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
skin fibroblast
10
upper lobe of left lung
9
H9
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
kidney tubule cell
9
liposarcoma
9
neuronal stem cell
9
temporal lobe
9
trophoblast
8
22Rv1
8
B-lymphoblastoid cell line
8
NAMALWA cell
8
choroid plexus epithelial cell
8
colon epithelial cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
mammary epithelial cell
8
mast cell
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
thoracic aorta
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
GM12865
7
IMR-90
7
SK-N-SH
7
WERI-Rb-1
7
amygdala
7
breast epithelium
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
cingulate gyrus
7
endometrium adenocarcinoma
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
limb
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
HT-29
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LoVo cell
6
OCI-LY7
6
SK-N-DZ
6
T47D
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
Date released
4
February, 2021
2
May, 2021
1
June, 2020
Software used
5
macs
2
abc
Lab
5
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
organ_slims!
lymphatic vessel
software_used.software.name!
encode-ccres
snap
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR596VGM
released
Annotation file set
: Histone modifications annotation for Blood Jurkat_BRACKETLClone_E6-1BRACKETR from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR613LTL
released
Annotation file set
: Histone modifications annotation for Blood Jurkat from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR648MAF
released
Annotation file set
: Binding sites annotation for Blood Jurkat_BRACKETLClone_E6-1BRACKETR from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191DOZ
released
Annotation file set
: Binding sites annotation for Blood Jurkat from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR670BGX
released
Annotation file set
: enhancer-gene predicton of Jurkat_anti-CD3_PMA_4hr-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR028TMR
released
Annotation file set
: enhancer-gene predicton of Jurkat-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR240TUP
released
Annotation file set
: Accessible chromatin annotation for Blood Jurkat from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP