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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
4
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
86
monocyte
41
stomach
38
heart
37
CD8-positive, alpha-beta T cell
33
lung
32
brain
31
kidney
29
small intestine
28
adrenal gland
28
large intestine
28
placenta
27
common myeloid progenitor, CD34-positive
26
left lung
22
A549
22
right lung
21
neural progenitor cell
21
thymus
20
hematopoietic multipotent progenitor cell
20
renal cortex interstitium
20
right kidney
19
renal pelvis
18
left kidney
16
B cell
15
liver
15
spinal cord
15
spleen
14
CD4-positive, alpha-beta memory T cell
12
foreskin keratinocyte
12
heart left ventricle
11
MCF-7
11
breast cancer cell
10
sigmoid colon
9
foreskin fibroblast
9
gastric cancer cell
9
trophoblast cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
K562
8
Rhabdomyosarcoma
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
natural killer cell
8
neuroblastoma cell
8
ovary
8
testis
8
upper lobe of left lung
7
H9
7
HepG2
7
Peyer's patch
7
adipose tissue
7
diffuse intrinsic pontine glioma
7
endocrine pancreas
7
esophageal adenocarcinoma
7
hepatocyte
7
layer of hippocampus
7
mononuclear cell
7
neurosphere
7
retina
7
thyroid gland
7
transverse colon
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
T-helper 1 cell
6
bronchial epithelial cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
fibroblast of lung
6
hESC cell
6
heart right ventricle
6
keratinocyte
6
left renal cortex interstitium
6
left renal pelvis
6
liposarcoma
6
lower leg skin
6
mammary epithelial cell
6
neuroblastoma cell line
6
pancreas
6
prostate gland
6
right renal pelvis
6
squamous cell lung carcinoma
6
temporal lobe
5
22Rv1
5
HeLa-S3
5
SK-N-DZ
5
T cell
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
adipocyte
5
breast epithelium
5
colonic mucosa
5
endodermal cell
5
epithelial cell of prostate
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
melanoma cell
5
mesenchymal stem cell
5
mesodermal cell
5
neuronal stem cell
5
omental fat pad
5
osteosarcoma
5
parathyroid adenoma
5
peripheral blood mononuclear cell
5
regulatory T cell
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
tibial nerve
4
HEK293
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
ascending aorta
4
cerebellum
4
cingulate gyrus
4
duodenal mucosa
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
mammary gland epithelial cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
osteoblast
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
thoracic aorta
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
HT-29
3
IMR-90
3
LNCAP
3
LNCaP clone FGC
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RPMI8226
3
RWPE1
3
SK-MEL-5
3
SK-N-MC
3
SW480
3
T47D
3
WERI-Rb-1
3
acute myeloid leukemia
3
astrocyte
3
cardiac fibroblast
3
chorion membrane
3
choroid plexus epithelial cell
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
limb
3
lung microvascular endothelial cell
3
lymphoblast
3
lymphoblastoid cell line
3
mesendoderm
3
naive T cell
3
neural cell
3
pancreatic ductal adenocarcinoma
3
pulmonary artery endothelial cell
3
putamen
3
retinal pigment epithelial cell
3
right atrium auricular region
3
skin fibroblast
3
suprapubic skin
Organ
5
connective tissue
Life stage
2
adult
2
unknown
Date released
3
February, 2021
2
September, 2022
Software used
2
encode-ccres
2
r
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
musculature of body
Showing 5 of 5 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP