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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
9
candidate regulatory elements
8
target gene predictions
7
accessible chromatin
7
chromatin state
5
binding sites
3
histone modifications
1
gene expression
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
Available data
4
bed bed3+
3
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
cell line
1
primary cell
Biosample term
20
heart
18
brain
15
lung
14
placenta
14
stomach
13
kidney
13
large intestine
13
left lung
13
small intestine
11
right lung
11
thymus
10
right kidney
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
adrenal gland
7
spinal cord
6
CD4-positive, alpha-beta memory T cell
6
left cardiac atrium
5
adipocyte
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
heart left ventricle
5
trophoblast cell
4
chorionic villus
4
foreskin keratinocyte
4
heart right ventricle
4
liver
4
neural progenitor cell
3
CD14-positive, CD16-negative classical monocyte
3
T-helper 17 cell
3
chorion membrane
3
common myeloid progenitor, CD34-positive
3
fibroblast of lung
3
islet of Langerhans
3
keratinocyte
3
neurosphere
3
retina
2
22Rv1
2
B cell
2
CD8-positive, alpha-beta memory T cell
2
ESC derived cell line
2
H1-hESC
2
HepG2
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
alternatively activated macrophage
2
bronchial epithelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
eye
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
foreskin fibroblast
2
germinal matrix
2
hepatocyte
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
mature neutrophil
2
neutrophil
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skin fibroblast
2
spleen
2
tongue
2
trophoblast
1
AG04449 cell
1
AG04450 cell
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
CD14-positive monocyte
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
CWRU1
1
DG-75 cell
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18507
1
H7-hESC
1
H9
1
HEK293
1
HEK293T
1
HK-2 cell
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
IMR-90
1
JVM-2 cell
1
K562
1
KARPAS-422 cell
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
MG63
1
NCI-H460 cell
1
NT2-D1 cell
1
PC-9
1
Panc1
1
SK-N-MC
1
SUDHL5
1
T cell
1
T-helper 1 cell
1
T-helper 2 cell
1
U-266 cell
1
UCSF-4
1
WERI-Rb-1
1
WI38
1
Z-138
1
amnion
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
arm bone
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
caudate nucleus
1
choroid plexus epithelial cell
1
cingulate gyrus
1
colon carcinoma
1
colon epithelial cell
1
colonic mucosa
1
dermis blood vessel endothelial cell
1
duodenal mucosa
1
ectodermal cell
1
embryonic facial prominence
1
endocrine pancreas
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
femur
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin melanocyte
1
germinal center
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hematopoietic multipotent progenitor cell
1
iPS DF 19.11
1
iPS DF 19.7
1
iPS DF 4.7 Cell Line
1
iPS DF 6.9
1
iris pigment epithelial cell
1
islet precursor cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
layer of hippocampus
1
leg bone
1
lung microvascular endothelial cell
1
lymphocyte
1
mammary epithelial cell
1
mammary gland epithelial cell
1
medulloblastoma
1
mesenchymal stem cell
1
mesendoderm
1
mesodermal cell
1
mid-frontal lobe
1
mononuclear cell
1
mucosa of rectum
1
naive T cell
1
neural cell
1
neuron
1
non-pigmented ciliary epithelial cell
1
osteoblast
1
ovary
1
pancreas
1
pericyte cell
1
pulmonary artery endothelial cell
Organ
7
connective tissue
2
penis
2
skin of body
Life stage
2
newborn
adult
1
unknown
Date released
4
August, 2017
3
September, 2022
Software used
7
chromhmm
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
organ_slims!
musculature of body
relevant_life_stage!
adult
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR652XRA
released
Annotation file set
: Chromatin states for BSS00353 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR126PKD
released
Annotation file set
: Chromatin states for BSS00697 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP