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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
primary cell
8
cell line
Biosample term
90
heart
86
stomach
81
kidney
73
brain
68
lung
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
56
large intestine
54
H1-hESC
52
left lung
50
neural progenitor cell
49
liver
48
thymus
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
31
adipose tissue
26
MCF-7
25
tibial nerve
24
body of pancreas
23
EndoC_BH1
23
sigmoid colon
22
caudate nucleus
22
pancreas
21
adipocyte
21
subcutaneous adipose tissue
20
breast cancer cell
20
coronary artery
20
ovary
20
pigmented layer of retina
19
HFFc6
19
heart right ventricle
19
right atrium auricular region
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
embryonic stem cell
17
omental fat pad
17
testis
16
GM12878
16
H9
16
chorionic villus
16
induced pluripotent stem cell
16
layer of hippocampus
16
upper lobe of left lung
15
ascending aorta
15
cerebellum
15
frontal cortex
14
endocrine pancreas
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mesenchymal stem cell
12
neuroblastoma cell
11
breast epithelium
11
cardiac muscle cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
KARPAS-422 cell
8
MM.1S
8
NAMALWA cell
8
cingulate gyrus
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
neuronal stem cell
7
right lobe of liver
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KBM-7
6
LNCAP
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
mesodermal cell
6
midbrain
6
middle frontal gyrus
6
mucosa of rectum
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
pancreatic ductal cell
6
superior temporal gyrus
6
urinary bladder
5
A172
5
ACHN
5
C1 segment of cervical spinal cord
5
Caki2
5
CyT49
5
Ewing sarcoma
5
GM04503
5
GM04504
5
H4
5
HCT-116 cell
5
HK-2 cell
5
HUES64
Life stage
3
adult
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
2
chromhmm
2
r
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
musculature of body
biosample_type!
primary cell
Showing 8 of 8 results
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Download
FileSet
DSR526ACK
released
Annotation file set
: Binding sites annotation for AG09309 cell (AG09309) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR051TBF
released
Annotation file set
: Candidate regulatory elements for BSS00066 AG09309 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR166XOE
released
Annotation file set
: Target gene predictions for BSS00066 AG09309 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR306TRD
released
Annotation file set
: Chromatin states for BSS00066 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR628SHA
released
Annotation file set
: Histone modifications annotation for Epidermis AG09309 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR440CPZ
released
Annotation file set
: Binding sites annotation for Epidermis AG09309 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR702GBN
released
Annotation file set
: Accessible chromatin annotation for Epidermis AG09309 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP