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Schema
Citing CMDGA
Clear Filters
Annotation type
1486
candidate regulatory elements
1252
target gene predictions
964
histone modifications
860
accessible chromatin
842
chromatin state
795
binding sites
647
gene expression
156
eQTL
154
differential activity
124
variant allelic effects
59
Fine-mapped variants
8
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
8
Genetic variant effects
Annotation type Category
5
snATAC-seq
3
ATAC-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
tissue
Biosample term
2
CD4-positive helper T cell
2
endothelial cell
1
liver
1
macrophage
1
mesenchymal stem cell
1
smooth muscle cell
Organ
blood vessel
3
vasculature
2
artery
2
connective tissue
2
epithelium
2
heart
musculature of body
1
liver
Date released
5
October, 2022
2
February, 2023
1
May, 2022
Software used
6
rasqual
4
eigenmt
2
matrix-eQTL
Lab
3
Stephen Parker, UMich
2
AMP-T2D consortium
2
Stephen S. Rich Lab @UVA
1
Karen Mohlke, UNC
Project
6
AMP
2
T1D
RFA
3
AMP
3
AMP2
2
T1D
organ_slims!
musculature of body
blood vessel
Showing 8 of 8 results
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR868SOF
released
Annotation file set
: Chromatin accessibility QTLs in macrophages passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP