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Schema
Citing CMDGA
Clear Filters
Annotation type
3
binding sites
2
histone modifications
1
accessible chromatin
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
1
ATAC-seq
1
pCHi-C
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
cell line
Biosample term
90
heart
84
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
H1-hESC
53
common myeloid progenitor, CD34-positive
52
left lung
51
neural progenitor cell
48
liver
47
thymus
45
right lung
42
hematopoietic multipotent progenitor cell
42
islet of Langerhans
42
right kidney
41
B cell
40
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
39
endothelial cell
36
hepatocyte
36
left kidney
34
heart left ventricle
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
spleen
30
adipose tissue
30
macrophage
26
regulatory T cell
25
MCF-7
25
tibial nerve
24
smooth muscle cell
23
body of pancreas
23
epithelial cell of proximal tubule
23
pancreatic ductal cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
adipocyte
22
caudate nucleus
22
foreskin keratinocyte
22
natural killer cell
22
pericyte cell
22
sigmoid colon
21
T-helper 1 cell
21
glomerular endothelial cell
21
pancreas
21
subcutaneous adipose tissue
20
breast cancer cell
20
keratinocyte
20
mononuclear cell
20
pigmented layer of retina
20
trophoblast cell
19
T-helper 17 cell
19
coronary artery
19
heart right ventricle
19
psoas muscle
19
right atrium auricular region
18
HFFc6
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
mesenchymal stem cell
18
substantia nigra
18
tibial artery
17
CD8-positive, alpha-beta T cell
17
gastrocnemius medialis
17
omental fat pad
17
pancreatic beta cell
17
testis
17
thyroid gland
17
transverse colon
16
HepG2
16
astrocyte
16
cardiac muscle cell
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
layer of hippocampus
16
muscle of trunk
16
osteoblast
16
retinal pigment epithelial cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD14-positive monocyte
15
CD4-positive, alpha-beta T cell
15
T-helper 2 cell
15
ascending aorta
15
cerebellum
15
fibroblast of lung
15
frontal cortex
15
induced pluripotent stem cell
15
mammary gland epithelial cell
15
pancreatic alpha cell
15
pancreatic delta cell
15
skeletal muscle myoblast
14
GM12878
14
endocrine pancreas
14
pancreatic acinar cell
14
prostate gland
14
putamen
13
H9
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
monocyte
12
neuroblastoma cell
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
neutrophil
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
tongue
9
vagina
8
GM12865
8
HEK293
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
skeletal muscle fiber
7
AG04449 cell
7
AG09319 cell
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
mesendoderm
Date released
May, 2021
5
February, 2021
1
March, 2020
1
November, 2022
Software used
6
macs
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
organ_slims!
ovary
month_released!
May, 2021
Showing 7 of 7 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR927IPU
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Expanded_potential_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR134CON
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Embryonic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161DPJ
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell KhES-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR084KAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_VAL-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR026FET
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell Embryonic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP