Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
55
HeLa-S3
50
H1-hESC
45
monocyte
43
islet of Langerhans
40
endothelial cell
37
kidney
32
heart
31
macrophage
30
fibroblast
30
retina
28
stomach
27
hepatocyte
25
liver
23
neural progenitor cell
23
pancreatic ductal cell
22
EndoC_BH1
22
K562
22
smooth muscle cell
21
CD8-positive, alpha-beta T cell
21
brain
21
subcutaneous adipose tissue
20
adrenal gland
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
adipocyte
19
muscle of arm
19
muscle of leg
19
pericyte cell
18
B cell
18
glomerular endothelial cell
18
heart left ventricle
18
small intestine
17
pancreatic beta cell
17
regulatory T cell
16
embryonic stem cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
large intestine
16
placenta
16
spleen
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
muscle of back
15
pancreatic acinar cell
15
pancreatic alpha cell
15
tibial nerve
14
T-helper 1 cell
14
coronary artery
13
H9
13
astrocyte
13
endothelial cell of umbilical vein
13
excitatory neuron
13
left lung
13
pancreas
13
renal cortex interstitium
13
renal pelvis
13
spinal cord
12
GM12878
12
adipose tissue
12
cardiac muscle cell
12
hematopoietic multipotent progenitor cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic delta cell
12
retinal pigment epithelial cell
12
right atrium auricular region
12
right lung
12
thymus
11
T cell
11
T-helper 17 cell
11
body of pancreas
11
caudate nucleus
11
erythroblast
11
keratinocyte
11
omental fat pad
11
osteoblast
11
tibial artery
10
frontal cortex
10
mesenchymal stem cell
10
natural killer cell
10
pancreatic stellate cell
10
putamen
10
right kidney
10
skeletal muscle satellite cell
10
substantia nigra
9
Ammon's horn
9
HepG2
9
MCF-7
9
cardiomyocytes
9
foreskin fibroblast
9
heart right ventricle
9
mammary epithelial cell
9
progenitor cell of endocrine pancreas
9
skeletal muscle myoblast
8
ascending aorta
8
breast cancer cell
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
lymphoblastoid cell line
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
8
testis
7
A549
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
foreskin keratinocyte
7
memory B cell
6
CD4-positive helper T cell
6
HUES8
6
SGBS preadipocytes
6
anterior cingulate cortex
6
aorta
6
cardiac precursors (cardiac muscle cell)
6
fibroblast of lung
6
iPSC derived cell line
6
left kidney
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuronal stem cell
6
sigmoid colon
6
temporal lobe
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Jurkat
5
LNCAP
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Peyer's patch
5
Plasma Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
T-helper 2 cell
5
amygdala
5
choroid plexus epithelial cell
5
enterocyte
5
glutamatergic neuron
5
hepatic stellate cell
5
hypothalamus
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mature neutrophil
5
mesangial cell
5
right lobe of liver
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
transverse colon
4
CyT49
4
GM06990
Life stage
1
embryonic
Date released
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
organ_slims!
ovary
month_released!
September, 2022
annotation_type!
histone modifications
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP