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Citing CMDGA
Clear Filters
Annotation type
1647
candidate regulatory elements
1313
target gene predictions
971
histone modifications
927
chromatin state
848
accessible chromatin
812
binding sites
635
gene expression
156
eQTL
134
differential activity
129
variant allelic effects
69
Fine-mapped variants
13
caQTL
5
hQTL
meQTL
3
other
3
pQTL
3
sQTL
2
variant to gene
1
representative DNase hypersensitivity sites
Annotation Category
6
Genetic variant effects
Annotation type Category
3
RNA-seq
3
quantitative proteomics
Available data
2
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
3
primary cell
3
tissue
Biosample term
2
cartilage tissue
1
cerebrospinal fluid
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
2
connective tissue
pancreas
1
bodily fluid
Life stage
6
adult
Date released
3
August, 2021
3
May, 2021
Software used
3
limix
3
sqtlseeker
2
fastqtl
2
peer
1
r
Lab
4
AMP-T2D consortium
2
ITG
Project
4
AMP
2
ITG
RFA
4
AMP
2
ITG
organ_slims!
pancreas
annotation_type!
meQTL
Showing 6 of 6 results
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Download
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP