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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
chromatin state
14
target gene predictions
3
accessible chromatin
2
histone modifications
1
binding sites
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
DNase-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
24
retina
20
fibroblast
20
pigmented layer of retina
18
monocyte
15
endothelial cell
15
macrophage
13
excitatory neuron
10
neural progenitor cell
10
pericyte cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
B cell
8
T cell
8
astrocyte
7
heart
6
SGBS preadipocytes
6
adipocyte
6
enterocyte
6
glutamatergic neuron
5
cardiac fibroblast
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
coronary artery
5
embryonic stem cell
5
erythroblast
5
heart left ventricle
5
hepatocyte
5
inhibitory neuron
5
osteoblast
5
regulatory T cell
5
right atrium auricular region
5
skeletal muscle fiber
5
tibial artery
5
tibial nerve
5
type II pneumocyte
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
basal cell
4
cardiac muscle cell
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
hepatic stellate cell
4
kidney
4
liver
4
memory B cell
4
myofibroblast cell
4
natural killer cell
4
skeletal muscle satellite cell
3
Schwann cell
3
T-helper 1 cell
3
adipose tissue
3
brain
3
brain pericyte
3
caudate nucleus
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
frontal cortex
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
goblet cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
mammary gland epithelial cell
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pons
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
3
type I pneumocyte
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
heart right ventricle
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
luminal epithelial cell of mammary gland
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
middle frontal gyrus
2
muscle of arm
2
muscle of leg
2
naive regulatory T cell
2
naive t cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
thoracic aorta
2
thyroid follicular cell
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
Organ
4
kidney
Life stage
3
fetal
Date released
2
January, 2020
1
June, 2020
1
May, 2020
Software used
3
macs
1
deltasvm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
AMP2
4
AMP
organ_slims!
pancreas
award.rfa!
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR920NWL
released
Annotation file set
: Accessible chromatin annotation for Kidney Fetal kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821RRV
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney fetal DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR151NNQ
released
Annotation file set
: Accessible chromatin annotation of left kidney from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR166VPA
released
Annotation file set
: Accessible chromatin annotation of kidney fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP