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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
DNase-seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
63
HeLa-S3
61
A549
53
common myeloid progenitor, CD34-positive
49
H1-hESC
44
CD8-positive, alpha-beta T cell
43
hematopoietic multipotent progenitor cell
39
B cell
39
K562
38
neural progenitor cell
37
liver
32
CD4-positive, alpha-beta memory T cell
31
stomach
30
adipose tissue
28
adrenal gland
28
retina
28
spleen
26
heart left ventricle
26
regulatory T cell
25
MCF-7
25
tibial nerve
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
sigmoid colon
21
caudate nucleus
20
T-helper 17 cell
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
pigmented layer of retina
19
HFFc6
19
coronary artery
19
heart
19
hepatocyte
19
psoas muscle
19
right atrium auricular region
18
foreskin fibroblast
18
natural killer cell
18
subcutaneous adipose tissue
18
tibial artery
17
T-helper 2 cell
17
embryonic stem cell
17
endothelial cell of umbilical vein
17
gastrocnemius medialis
17
omental fat pad
17
substantia nigra
17
thyroid gland
17
transverse colon
16
CD14-positive monocyte
16
kidney
16
osteoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
HepG2
15
ascending aorta
15
cerebellum
15
frontal cortex
15
layer of hippocampus
15
neutrophil
15
ovary
15
retinal pigment epithelial cell
14
GM12878
14
T cell
14
prostate gland
14
putamen
14
skeletal muscle myoblast
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
adipocyte
13
bronchial epithelial cell
13
fibroblast of lung
13
heart right ventricle
13
keratinocyte
13
mammary gland epithelial cell
13
small intestine
12
Ammon's horn
12
aorta
12
lung
12
lymphoblastoid cell line
12
neuroblastoma cell
12
temporal lobe
11
brain
11
fibroblast of dermis
11
macrophage
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
testis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
lymphocyte
10
mammary epithelial cell
10
progenitor cell of endocrine pancreas
10
thoracic aorta
9
SK-N-DZ
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
endothelial cell
9
esophagus
9
fibroblast of cardiac tissue
9
hepatic stellate cell
9
liposarcoma
9
parathyroid adenoma
9
vagina
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HL-60
8
NAMALWA cell
8
dermis blood vessel endothelial cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
induced pluripotent stem cell
8
lower leg skin
8
mesenchymal stem cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
thymus
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
HAP-1
7
HT-29
7
LNCaP clone FGC
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiac muscle cell
7
cardiomyocytes (cardiac muscle cell)
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
renal cortical epithelial cell
7
right lobe of liver
7
skeletal muscle satellite cell
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H9
6
HCT116
6
HUES8
6
HuH-7
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
SJSA1
6
SW480
6
WI38
6
anterior cingulate cortex
6
chondrocyte
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
midbrain
6
middle frontal gyrus
6
neuroblastoma cell line
6
neuronal stem cell
6
nucleus accumbens
6
occipital lobe
6
stomach smooth muscle
Life stage
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
Software used
3
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
organ_slims!
pancreas
relevant_life_stage!
embryonic
Showing 4 of 4 results
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP