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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
47
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
97
monocyte
51
HeLa-S3
37
H1-hESC
23
neural progenitor cell
20
fibroblast
19
HFFc6
19
endothelial cell
18
pericyte cell
16
K562
13
excitatory neuron
13
smooth muscle cell
12
endothelial cell of hepatic sinusoid
12
macrophage
11
hepatocyte
10
astrocyte
9
kidney
6
GM12878
6
H9
6
colon epithelial cell
6
left cardiac atrium
6
lymphocyte
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
5
HepG2
5
T cell
5
cortical cell of adrenal gland
5
erythroblast
5
inhibitory neuron
5
islet of Langerhans
5
type II pneumocyte
4
CyT49
4
HUES8
4
blood vessel smooth muscle cell
4
coronary artery
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
iPSC derived cell line
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
pancreatic beta cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the esophagus
3
cardiac fibroblast
3
B cell
3
CD4-positive helper T cell
3
endocardial cell
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
heart
3
heart left ventricle
3
mesothelial cell
3
oligodendrocyte precursor cell
3
osteoblast
3
pancreas
3
pancreatic A cell
3
pancreatic alpha cell
3
schwann cell
3
skeletal muscle fiber
3
type B pancreatic cell
3
type I pneumocyte
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
HCT116
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
alveolar macrophage
2
basal cell
2
basal cell of epidermis
2
cardiac endothelial cell
2
cardiac muscle cell
2
ciliated cell
2
club cell
2
colon goblet cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
hepatic stellate cell
2
intestinal tuft cell
2
liver
2
luteal cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
memory B cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive t cell
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
omental fat pad
2
pancreatic delta cell
2
pancreatic stellate cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
regular atrial cardiac myocyte
2
respiratory goblet cell
2
retinal pigment epithelial cell
2
right atrium auricular region
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
smooth muscle cell of the coronary artery
2
stomach neuroendocrine cell
2
stromal cell
2
subcutaneous adipose tissue
2
thyroid follicular cell
2
tibial artery
2
tibial nerve
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
2
type II muscle cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
hindlimb muscle
1
Ammon's horn
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Schwann cell
1
adipocyte
1
aortic endothelial cell
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell of umbilical vein
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
extravillous trophoblast
1
fat cell
1
fetal heart
1
fetal thymocyte
1
fibroblast of the aortic adventitia
1
forelimb muscle
1
frontal cortex
1
gastric goblet cell
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
heart right ventricle
1
hepatoblast
1
hippocampal neuron
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
lung neuroendocrine cell
1
medulla oblongata
1
megakaryocyte
1
metanephros
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
neuron
1
occipital lobe
1
pancreatic D cell
1
pancreatic PP cell
Date released
2
November, 2021
Software used
1
abc
1
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
organ_slims!
pericardium
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE