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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
7
ChIP-seq
5
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
primary cell
Biosample term
41
A549
41
common myeloid progenitor, CD34-positive
30
hematopoietic multipotent progenitor cell
27
CD14-positive monocyte
25
B cell
24
stomach
23
CD4-positive, alpha-beta memory T cell
21
adrenal gland
20
spleen
17
liver
17
sigmoid colon
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
14
adipose tissue
14
body of pancreas
14
gastrocnemius medialis
14
thyroid gland
14
transverse colon
13
heart left ventricle
13
mononuclear cell
13
pancreas
13
psoas muscle
12
endothelial cell of umbilical vein
12
tibial nerve
11
Peyer's patch
11
adipocyte
11
caudate nucleus
11
endocrine pancreas
11
foreskin fibroblast
11
heart
11
natural killer cell
11
ovary
11
small intestine
11
upper lobe of left lung
10
CD8-positive, alpha-beta T cell
10
T-helper 1 cell
10
fibroblast of lung
10
kidney
10
pituitary stalk
10
regulatory T cell
10
skeletal muscle myoblast
9
HeLa-S3
9
T cell
9
breast epithelium
9
esophagus squamous epithelium
9
layer of hippocampus
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
ascending aorta
8
coronary artery
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of dermis
8
heart right ventricle
8
lower leg skin
8
omental fat pad
8
right atrium auricular region
8
tibial artery
7
SK-N-DZ
7
SK-N-SH
7
bronchial epithelial cell
7
frontal cortex
7
kidney tubule cell
7
lung
7
mammary gland epithelial cell
7
osteoblast
7
parathyroid adenoma
7
prostate gland
7
substantia nigra
7
temporal lobe
7
testis
6
22Rv1
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
putamen
6
renal cortical epithelial cell
6
stomach smooth muscle
6
thoracic aorta
6
uterus
6
vagina
5
cardiac fibroblast
5
Ammon's horn
5
GM12878
5
HAP-1
5
HT-29
5
HepG2
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
cardiac muscle cell
5
epithelial cell of proximal tubule
5
hepatic stellate cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
mammary epithelial cell
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
middle frontal gyrus
5
occipital lobe
5
pons
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
5
thymus
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H4
4
HL-60
4
KARPAS-422 cell
4
KBM-7
4
L1-S8
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
M059J
4
MG63
4
PC-3
4
Panc1
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
4
SK-N-MC
4
SW480
4
WERI-Rb-1
4
astrocyte
4
brain microvascular endothelial cell
4
brain pericyte
4
cerebellar cortex
4
dermis lymphatic vessel endothelial cell
4
fibroblast of mammary gland
4
fibroblast of peridontal ligament
4
fibroblast of pulmonary artery
4
fibroblast of the conjunctiva
4
iPS DF 19.11
4
iris pigment epithelial cell
4
lung microvascular endothelial cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
non-pigmented ciliary epithelial cell
4
peripheral blood mononuclear cell
4
pulmonary artery endothelial cell
4
urinary bladder
3
ACC112
Organ
5
connective tissue
Life stage
3
adult
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
organ_slims!
placenta
relevant_life_stage!
embryonic
Showing 5 of 5 results
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Download
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP