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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
candidate regulatory elements
Annotation Category
3
cis-regulatory elements
Target gene links
Annotation type Category
3
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
stem cell
Biosample term
54
heart
49
muscle of arm
45
brain
42
lung
42
muscle of leg
41
muscle of back
40
large intestine
40
placenta
40
stomach
39
left lung
38
kidney
35
small intestine
33
right lung
32
right kidney
29
renal cortex interstitium
28
renal pelvis
28
thymus
27
left kidney
24
adrenal gland
21
spinal cord
14
trophoblast cell
12
chorionic villus
12
muscle of trunk
10
left renal cortex interstitium
10
neurosphere
9
neural progenitor cell
9
retina
9
right renal cortex interstitium
8
H9
8
left renal pelvis
8
right renal pelvis
6
endodermal cell
6
eye
6
heart left ventricle
6
liver
6
tongue
6
trophoblast
5
cardiac muscle cell
5
limb
5
mesodermal cell
4
HEK293
4
chorion membrane
4
germinal matrix
4
heart right ventricle
4
left cardiac atrium
4
neural cell
4
skin fibroblast
4
testis
3
ELF-1
3
H1-hESC
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
UCSF-4
3
amnion
3
cardiac precursors (cardiac muscle cell)
3
ectodermal cell
3
hepatocyte
3
islet precursor cell
3
kidney capillary endothelial cell
3
mesenchymal stem cell
3
mesendoderm
3
neuron
3
ovary
3
smooth muscle cell
3
spleen
3
umbilical cord
2
AG04449 cell
2
AG04450 cell
2
ES-I3
2
H7-hESC
2
HEK293T
2
HTR-8/Svneo
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
cardiac mesoderm primordium
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
embryonic facial prominence
2
fibroblast of cardiac tissue
2
neuroepithelial stem cell
2
neuronal stem cell
2
placental basal plate
2
skin of body
2
urinary bladder
1
AG04449
1
AG04450
1
H1
1
H7
1
aorta
1
aortic valve
1
astrocyte
1
cardiac fibroblast
1
ecto neural progenitor cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
forelimb muscle
1
hindlimb muscle
1
left leg bone
1
mid-neurogenesis radial glial cells
1
mitral valve
1
pulmonary valve
1
radial glial cell
1
right arm bone
1
right cardiac atrium
1
tricuspid valve
Organ
3
embryo
Life stage
8
unknown
3
embryonic
Date released
2
September, 2022
1
August, 2017
Software used
2
chromhmm
1
r
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
organ_slims!
skeleton
annotation_category!
Target gene links
Showing 3 of 3 results
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Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP