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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
19
endothelial cell
18
hepatocyte
16
endothelial cell of hepatic sinusoid
7
colon epithelial cell
6
pancreatic acinar cell
6
pancreatic ductal cell
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
type II pneumocyte
4
pancreatic beta cell
3
endocardial cell
3
endothelial cell of lymphatic vessel
3
enterocyte
3
kidney tubule cell
3
mesothelial cell
3
pancreatic A cell
3
pancreatic alpha cell
3
retinal pigment epithelial cell
3
type B pancreatic cell
3
type I pneumocyte
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
choroid plexus epithelial cell
2
club cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus squamous epithelium
2
foveolar cell of stomach
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
myoepithelial cell
2
myoepithelial cell of mammary gland
2
non keratinizing barrier epithelial cell
2
pancreatic delta cell
2
paneth cell
2
parietal cell
2
peptic cell
2
renal cortical epithelial cell
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
thyroid follicular cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
1
EndoC_BH1
1
aortic endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
gastric goblet cell
1
goblet cell
1
iris pigment epithelial cell
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
non-pigmented ciliary epithelial cell
1
pancreatic D cell
1
pancreatic PP cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
ureteric bud
Organ
3
epithelium
3
pancreas
Date released
2
November, 2021
1
February, 2024
Software used
2
abc
1
macs
Lab
2
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
organ_slims!
skin of body
Showing 3 of 3 results
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Download
FileSet
DSR243ZIR
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Alpha
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR146SQD
released
Annotation file set
: Target gene predictions of Pancreatic Alpha Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR182RBF
released
Annotation file set
: Target gene predictions of Pancreatic Alpha Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE