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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
gene expression
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
1
Gene expression levels
Annotation type Category
5
ChIP-seq
4
DNase-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
6
bed bed3+
1
bed bed9
1
bigWig
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
48
CD8-positive, alpha-beta T cell
37
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
hepatocyte
28
regulatory T cell
23
T-helper 1 cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
natural killer cell
20
endothelial cell
20
endothelial cell of umbilical vein
20
mononuclear cell
18
trophoblast cell
17
T-helper 2 cell
17
osteoblast
16
fibroblast of lung
16
pancreatic beta cell
16
skeletal muscle myoblast
15
T cell
15
neutrophil
15
pancreatic alpha cell
15
pancreatic ductal cell
14
endothelial cell of hepatic sinusoid
14
macrophage
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
pancreatic delta cell
13
CD4-positive, alpha-beta T cell
13
mammary epithelial cell
13
neurosphere
12
bronchial epithelial cell
11
glomerular visceral epithelial cell
11
pancreatic acinar cell
10
kidney tubule cell
10
mammary gland epithelial cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
mature neutrophil
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
8
astrocyte
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mesangial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
smooth muscle cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
epithelial cell of esophagus
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pericyte cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
epithelial cell of amnion
Life stage
4
unknown
1
embryonic
Date released
3
September, 2022
2
February, 2021
1
February, 2024
1
January, 2022
1
May, 2021
Software used
3
r
2
macs
1
abc
1
chromhmm
1
encode-ccres
Lab
Bing Ren, UCSD
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
skin of body
lab.title!
Bing Ren, UCSD
Showing 8 of 8 results
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Download
FileSet
DSR223CRF
released
Annotation file set
: Candidate regulatory elements for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR903FVP
released
Annotation file set
: Target gene predictions for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR424EJT
released
Annotation file set
: Chromatin states for BSS00089 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR846FJI
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_human primary fetal astrocytes batch 2; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR977NGV
released
Annotation file set
: Gene expression annotation of RNA-seq_human primary fetal astrocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488ZSW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR720CZQ
released
Annotation file set
: Histone modifications annotation for Neural Astrocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR031ZTG
released
Annotation file set
: enhancer-gene predicton of astrocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP