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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
41
common myeloid progenitor, CD34-positive
27
CD14-positive monocyte
23
B cell
23
CD4-positive, alpha-beta memory T cell
15
CD8-positive, alpha-beta memory T cell
13
mononuclear cell
13
trophoblast cell
12
endothelial cell of umbilical vein
10
T-helper 1 cell
10
fibroblast of lung
10
natural killer cell
10
neurosphere
10
regulatory T cell
9
CD8-positive, alpha-beta T cell
9
skeletal muscle myoblast
8
CD4-positive, alpha-beta T cell
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
7
bronchial epithelial cell
7
epithelial cell of prostate
7
kidney tubule cell
7
osteoblast
6
T-cell
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
glomerular endothelial cell
6
hepatocyte
6
mammary gland epithelial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
renal cortical epithelial cell
5
cardiac fibroblast
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
cardiac muscle cell
5
choroid plexus epithelial cell
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
hepatic stellate cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
mammary epithelial cell
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD1c-positive myeloid dendritic cell
4
astrocyte
4
brain microvascular endothelial cell
4
fibroblast of mammary gland
4
fibroblast of peridontal ligament
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
glomerular visceral epithelial cell
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
lung microvascular endothelial cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
non-pigmented ciliary epithelial cell
4
peripheral blood mononuclear cell
4
pulmonary artery endothelial cell
3
astrocyte of the spinal cord
3
brain pericyte
3
cardiac fibroblast
3
epithelial cell of esophagus
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
skeletal muscle satellite cell
3
stromal cell of bone marrow
2
CD4-positive helper T cell
2
acute myeloid leukemia cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
bone marrow cell
2
epithelial cell of amnion
2
luminal epithelial cell of mammary gland
2
mammary stem cell
2
monocyte
2
pancreatic ductal cell
2
pericyte cell
2
regular cardiac myocyte
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-lymphocyte
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
amniotic epithelial cell
1
aortic adventitial fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
erythroblast
1
erythroid cell
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
neoplastic cell
1
pancreatic A cell
1
pancreatic acinar cell
1
peripheral blood stem cell
1
primordial germ cell
1
pulmonary interstitial fibroblast
1
renal epithelial cell
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
tracheal epithelial cell
1
type B pancreatic cell
Organ
5
brain
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
Software used
2
r
1
deltasvm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
skin of body
Showing 5 of 5 results
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Download
FileSet
DSR489AIN
released
Annotation file set
: Candidate regulatory elements for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113KBA
released
Annotation file set
: Target gene predictions for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR990VSV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the hippocampus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR565ZWS
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain hippocampus astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR152JXW
released
Annotation file set
: Accessible chromatin annotation of brain hippocampus astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP