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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
primary cell
Biosample term
41
stomach
40
heart
36
kidney
34
lung
33
muscle of arm
30
brain
29
adrenal gland
29
small intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
20
hematopoietic multipotent progenitor cell
20
renal cortex interstitium
20
right kidney
20
thymus
19
renal pelvis
18
left kidney
16
B cell
16
spleen
15
monocyte
14
CD4-positive, alpha-beta memory T cell
14
liver
14
spinal cord
13
T-helper 1 cell
12
T-helper 17 cell
12
heart left ventricle
12
neural progenitor cell
12
regulatory T cell
11
cardiomyocytes
11
islet of Langerhans
10
CD8-positive, alpha-beta T cell
10
adipose tissue
10
body of pancreas
10
sigmoid colon
9
H1-hESC
9
MCF-7
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
ovary
9
progenitor cell of endocrine pancreas
9
trophoblast cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
T-helper 2 cell
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
natural killer cell
8
testis
8
thyroid gland
8
tibial nerve
8
transverse colon
7
H9
7
K562
7
Peyer's patch
7
endocrine pancreas
7
heart right ventricle
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
psoas muscle
7
retina
7
skeletal muscle tissue
7
subcutaneous adipose tissue
7
upper lobe of left lung
6
adipocyte
6
cardiac muscle cell
6
caudate nucleus
6
fibroblast of lung
6
kidney interstitial cell
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
right renal pelvis
6
substantia nigra
6
temporal lobe
5
HeLa-S3
5
WI38
5
aorta
5
ascending aorta
5
cerebellum
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
mesangial cell
5
mesenchymal stem cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreas
5
parathyroid adenoma
5
right atrium auricular region
5
right renal cortex interstitium
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
vagina
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T cell
4
T-cell
4
angular gyrus
4
bone tissue
4
cardiac fibroblast
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cingulate gyrus
4
colonic mucosa
4
coronary artery
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
eye
4
fibroblast of breast
4
foreskin melanocyte
4
frontal cortex
4
gamma-delta T cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
nephron progenitor
4
neural cell
4
neutrophil
4
osteoblast
4
peripheral blood mononuclear cell
4
prostate gland
4
skeletal muscle satellite cell
4
smooth muscle cell
4
stomach smooth muscle
4
thoracic aorta
4
tibial artery
4
tongue
4
trophoblast
4
uterus
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Fibroblast
3
HEK293
3
LNCaP clone FGC
3
M2 Macrophage
3
MCF 10A
3
Mast Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
T47D
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
astrocyte
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney resident macrophage
3
left cardiac atrium
limb
3
memory B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
putamen
3
right cardiac atrium
3
right lobe of liver
3
urinary bladder
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Brodmann (1909) area 46
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
CMK
2
Caki2
2
DND-41
Organ
6
connective tissue
Life stage
3
adult
2
unknown
Date released
3
February, 2021
2
September, 2022
1
February, 2024
Software used
4
r
2
encode-ccres
1
deeptools
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
organ_slims!
skin of body
epithelium
biosample_term_name!
limb
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP