Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
30
small intestine
28
large intestine
11
sigmoid colon
9
transverse colon
8
Peyer's patch
4
colon epithelial cell
4
colonic mucosa
4
duodenal mucosa
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
3
HT-29
3
SW480
3
enterocyte
2
HCT116
2
RKO
2
enteric smooth muscle cell
1
Caco-2
1
HCT-116 cell
1
LoVo
1
crypt of Lieberkuhn
1
enterocyte of epithelium of small intestine
1
paneth cell
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
small intestine goblet cell
Disease term
1
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
Life stage
2
adult
Date released
1
February, 2021
1
June, 2020
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
organ_slims!
skin of body
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR211KZE
released
Annotation file set
: Candidate regulatory elements for BSS01682 SW480 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR047FTW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SW480
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR118XAD
released
Annotation file set
: Accessible chromatin annotation for Digestive tract SW 480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP