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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
116
monocyte
58
HeLa-S3
48
CD8-positive, alpha-beta T cell
47
heart
47
stomach
44
H1-hESC
44
kidney
38
brain
36
neural progenitor cell
35
lung
34
muscle of arm
33
adrenal gland
33
liver
32
fibroblast
32
placenta
32
retina
31
endothelial cell
31
islet of Langerhans
31
muscle of leg
30
large intestine
30
macrophage
29
K562
28
common myeloid progenitor, CD34-positive
28
muscle of back
26
A549
26
B cell
26
left lung
26
thymus
24
hepatocyte
23
CD14-positive monocyte
23
right lung
22
hematopoietic multipotent progenitor cell
22
right kidney
21
heart left ventricle
21
renal cortex interstitium
21
renal pelvis
21
smooth muscle cell
21
spinal cord
21
spleen
20
adipocyte
20
breast cancer cell
20
pericyte cell
20
pigmented layer of retina
19
HFFc6
18
left kidney
17
embryonic stem cell
17
keratinocyte
16
adipose tissue
16
endothelial cell of hepatic sinusoid
16
tibial nerve
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
HepG2
15
MCF-7
15
T cell
15
foreskin fibroblast
15
pancreatic ductal cell
14
CD4-positive, alpha-beta memory T cell
14
GM12878
14
H9
14
caudate nucleus
14
coronary artery
14
natural killer cell
14
pancreas
14
regulatory T cell
14
subcutaneous adipose tissue
13
astrocyte
13
body of pancreas
13
endothelial cell of umbilical vein
13
foreskin keratinocyte
13
mesenchymal stem cell
12
cardiac muscle cell
12
excitatory neuron
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
osteoblast
12
pancreatic beta cell
12
retinal pigment epithelial cell
12
skeletal muscle myoblast
12
substantia nigra
12
tibial artery
12
trophoblast cell
11
erythroblast
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
omental fat pad
11
ovary
11
pancreatic acinar cell
11
psoas muscle
11
putamen
11
right atrium auricular region
11
sigmoid colon
10
Rhabdomyosarcoma
10
fibroblast of lung
10
gastric cancer cell
10
heart right ventricle
10
neuronal stem cell
10
pancreatic alpha cell
10
testis
10
thyroid gland
9
bronchial epithelial cell
9
diffuse intrinsic pontine glioma
9
layer of hippocampus
9
liposarcoma
9
muscle of trunk
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
transverse colon
9
upper lobe of left lung
8
Ammon's horn
8
B-lymphoblastoid cell line
8
CD8-positive, alpha-beta memory T cell
8
ascending aorta
8
cerebellum
8
fibroblast cell line
8
fibroblast of cardiac tissue
8
frontal cortex
8
gastrocnemius medialis
8
left cardiac atrium
8
mammary gland epithelial cell
8
pituitary stalk
8
prostate gland
8
skeletal muscle tissue
7
CD4-positive helper T cell
7
HEK293
7
IMR-90
7
Jurkat
7
Peyer's patch
7
T-helper 1 cell
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
left renal cortex interstitium
7
lymphocyte
7
mature neutrophil
7
mesendoderm
7
temporal lobe
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
PC-9
6
aorta
6
breast epithelium
6
chondrocyte
6
colon epithelial cell
6
epithelial cell of prostate
6
foreskin melanocyte
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mononuclear cell
6
neuroblastoma cell line
6
right renal cortex interstitium
6
right renal pelvis
6
trophoblast
6
uterus
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
MG63
5
SK-N-MC
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
amygdala
5
chorionic villus
5
dermis blood vessel endothelial cell
5
enterocyte
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
fibroblast of dermis
5
glutamatergic neuron
5
left renal pelvis
5
midbrain
5
neurosphere
Life stage
2
embryonic
Date released
3
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
3
macs
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
organ_slims!
small intestine
month_released!
January, 2020
software_used.software.name!
r
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP