Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
candidate regulatory elements
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
HiC
1
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
56
large intestine
23
sigmoid colon
19
transverse colon
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
mucosa of rectum
8
muscle layer of colon
6
enterocyte
5
HT-29
5
tracheal epithelial cell
4
HCT-116 cell
4
RKO
4
SW480
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
3
HCT116
2
paneth cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Disease term
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
0
trachea
Life stage
1
adult
Date released
2
February, 2024
1
February, 2021
Software used
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
organ_slims!
small intestine
disease_term_name!
colorectal adenocarcinoma
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR311TAK
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. wild-type
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XYA
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. WAPL KD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR730OKU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HCT116
Lab:
AMP-T2D consortium
Project:
AMP