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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
81
kidney
42
right kidney
40
renal cortex interstitium
40
renal pelvis
36
left kidney
23
epithelial cell of proximal tubule
21
glomerular endothelial cell
13
glomerular visceral epithelial cell
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
11
right renal cortex interstitium
10
kidney tubule cell
9
HEK293
8
kidney glomerular epithelial cell
8
renal cortical epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
5
ACHN
5
Caki2
5
RCC 7860
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
renal cell carcinoma
4
G401
4
cortex of kidney
4
kidney connecting tubule epithelial cell
3
HEK293T
3
S-shaped body
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
renal connecting tubule
2
renal principal cell
1
left kidney
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
nephron tubule
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
ureteric bud
Disease term
3
renal cell adenocarcinoma
Organ
5
kidney
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
spinal cord
Showing 5 of 5 results
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Download
FileSet
DSR486ZRU
released
Annotation file set
: Candidate regulatory elements for BSS00037 ACHN from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995GUV
released
Annotation file set
: Target gene predictions for BSS00037 ACHN from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR869VSH
released
Annotation file set
: Chromatin states for BSS00037 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR757WVZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE ACHN
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR192STS
released
Annotation file set
: Accessible chromatin annotation for Kidney ACHN from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP