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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
21
candidate regulatory elements
12
chromatin state
12
target gene predictions
6
accessible chromatin
3
gene expression
1
binding sites
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
5
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
7
bed bed3+
4
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
Biosample term
104
monocyte
35
CD8-positive, alpha-beta T cell
26
neural progenitor cell
24
retina
20
pigmented layer of retina
18
fibroblast
17
endothelial cell
14
macrophage
13
excitatory neuron
12
hepatocyte
12
kidney
11
breast cancer cell
10
B cell
10
pancreatic ductal cell
10
pericyte cell
10
retinal pigment epithelial cell
9
EndoC_BH1
9
Rhabdomyosarcoma
9
astrocyte
9
gastric cancer cell
9
smooth muscle cell
8
T cell
8
embryonic stem cell
8
islet of Langerhans
8
neuroblastoma cell
8
pancreatic acinar cell
8
pancreatic beta cell
7
HepG2
7
adipocyte
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
osteoblast
7
pancreatic alpha cell
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
SGBS preadipocytes
6
chondrocyte
6
endothelial cell of hepatic sinusoid
6
fibroblast of cardiac tissue
6
glutamatergic neuron
6
hESC cell
6
heart
6
liposarcoma
6
liver
6
natural killer cell
6
neuroblastoma cell line
6
pancreas
6
regulatory T cell
6
squamous cell lung carcinoma
5
T-cell acute lymphoblastic leukemia
5
brain
5
erythroblast
5
hepatic stellate cell
5
inhibitory neuron
5
keratinocyte
5
melanoma cell
5
osteosarcoma
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
Rh-4 cell
4
acute myeloid leukemia
4
acute myeloid leukemia cell
4
cardiac muscle cell
4
heart left ventricle
4
lymphoblastoid cell line
4
mammary epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
neuronal stem cell
4
pancreatic stellate cell
4
rhabdomyosarcoma cell
4
skin fibroblast
4
stomach
4
type II pneumocyte
3
cardiac fibroblast
3
B-lymphocyte
3
CD4-positive helper T cell
3
COLO205
3
Ewing sarcoma
3
Jurkat
3
MCF-7
3
RS4-11 cell
3
T-helper 1 cell
3
Th1 cell
3
adipose-derived stem cell
3
aortic endothelial cell
3
bone marrow cell
3
bronchial epithelial cell
3
caudate nucleus
3
choroid plexus epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
diffuse large B-cell lymphoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
erythroid cell
3
esophageal squamous cell carcinoma
3
foreskin fibroblast
3
gabaergic neuron
3
glial cell
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
glomerular visceral epithelial cell
3
lymphoblast
3
mammary gland epithelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic ductal adenocarcinoma
3
placenta
3
plasma cell
3
preadipocyte
3
prostate gland
3
putamen
3
right atrium auricular region
3
skeletal muscle myoblast
3
superior temporal gyrus
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
D341 Med cell
2
G-401 cell
2
GM06990
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H7-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HeLa cell
2
HuH-7
2
IMR-90
2
Ishikawa
2
K562
2
KARPAS-422 cell
2
Kasumi-1
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Muller cell
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PANC-1 cell
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Rh-5 cell
2
SAEC
2
SK-N-DZ
Organ
5
musculature of body
Life stage
1
unknown
Date released
3
November, 2021
1
February, 2021
1
February, 2024
1
June, 2020
1
May, 2022
Software used
7
macs
Lab
3
AMP-T2D consortium
3
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
4
AMP
3
ENCODE
RFA
3
AMP
3
ENCODE3
1
AMP2
organ_slims!
spinal cord
Showing 7 of 7 results
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Download
FileSet
DSR534XMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of skeletal muscle satellite cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR116URN
released
Annotation file set
: Accessible chromatin annotation of Satellite Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR347TWG
released
Annotation file set
: Accessible chromatin annotation of Fetal Satellite Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR101HMU
released
Annotation file set
: Accessible chromatin annotation of Fetal Satellite Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR383WGV
released
Annotation file set
: Histone modifications annotation for Blood Hematopoietic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR724QWN
released
Annotation file set
: Cell type chromatin broad peaks and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR365ACB
released
Annotation file set
: Accessible chromatin annotation for Blood Hematopoietic Stem Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP