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Schema
Citing CMDGA
Clear Filters
Annotation type
1662
candidate regulatory elements
1353
target gene predictions
976
histone modifications
940
chromatin state
911
accessible chromatin
814
binding sites
682
gene expression
167
differential activity
167
eQTL
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
7
Genetic variant effects
Annotation type Category
3
quantitative proteomics
2
RNA-seq
Available data
4
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
2
cartilage tissue
2
islet of Langerhans
2
tissue
1
cerebrospinal fluid
Organ
2
connective tissue
2
pancreas
1
bodily fluid
Life stage
3
adult
Date released
3
August, 2021
2
March, 2023
1
August, 2020
1
August, 2022
Software used
2
combined S2G strategy
2
fastqtl
2
peer
2
qTLtools
1
r
Lab
5
AMP-T2D consortium
2
ITG
Project
5
AMP
2
ITG
RFA
5
AMP
2
ITG
organ_slims!
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Showing 7 of 7 results
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FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR860BOU
released
Annotation file set
: Variant to gene predictions in 1000G
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619JSP
released
Annotation file set
: Variant to gene predictions in UK biobank
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG