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Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
8
gene expression
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
stem cell
Biosample term
22
heart
21
brain
20
stomach
19
A549
19
neural progenitor cell
18
kidney
16
lung
16
muscle of arm
16
placenta
15
muscle of leg
15
small intestine
14
adrenal gland
14
large intestine
13
left lung
13
muscle of back
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
right kidney
9
gastric cancer cell
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
K562
8
Rhabdomyosarcoma
8
neuroblastoma cell
8
spinal cord
7
HepG2
7
MCF-7
7
adipocyte
7
diffuse intrinsic pontine glioma
7
embryonic stem cell
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
adipose tissue
6
hESC cell
6
left cardiac atrium
6
liposarcoma
6
neuroblastoma cell line
6
spleen
6
squamous cell lung carcinoma
6
temporal lobe
5
T-cell acute lymphoblastic leukemia
5
caudate nucleus
5
heart right ventricle
5
layer of hippocampus
5
melanoma cell
5
osteosarcoma
5
sigmoid colon
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
colonic mucosa
4
endocrine pancreas
4
gastrocnemius medialis
4
islet of Langerhans
4
muscle of trunk
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
Ewing sarcoma
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
Peyer's patch
3
SK-N-DZ
3
ascending aorta
3
cardiac muscle cell
3
cerebellum
3
chorion membrane
3
cingulate gyrus
3
coronary artery
3
diffuse large B-cell lymphoma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
immortal human breast epithelial cell line cell
3
lymphoblast
3
lymphoblastoid cell line
3
mesenchymal stem cell
3
mucosa of rectum
3
pancreatic ductal adenocarcinoma
3
right cardiac atrium
3
stomach smooth muscle
3
thoracic aorta
3
tibial artery
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CMK
2
COLO205
2
Caco-2 cell
2
ESC derived cell line
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
H7-hESC
2
HAP-1
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HuH-7
2
IMR-90
2
JVM-2 cell
2
Jurkat
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NT2-D1 cell
2
OCI-LY1
2
OCI-LY7
2
PC-3
2
PC-9
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Rh-4 cell
2
SK-MEL-5
2
SK-N-MC
2
SK-N-SH
2
SW480
2
T47D
2
U-266 cell
2
VCaP cell
2
WERI-Rb-1
2
Z-138
2
acute myeloid leukemia
2
breast epithelium
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
colon carcinoma
2
endometriosis
2
epithelial ovarian cancer cell
2
esophageal carcinoma
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast
2
fibroblast of cardiac tissue
2
frontal cortex
2
germinal matrix
2
glioblastoma multiforme cancer stem cell
2
globus pallidus
2
hematopoietic cell
2
iPS DF 4.7 Cell Line
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte
2
medulloblastoma cell line
2
mesendoderm
2
mesodermal cell
2
metastatic melanoma
2
midbrain
2
multiple myeloma cell line
2
muscle cell
2
muscle layer of colon
Organ
3
embryo
Life stage
2
embryonic
Date released
1
August, 2017
1
February, 2021
1
September, 2022
Software used
2
chromhmm
1
macs
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
organ_slims!
thymus
biosample_type!
primary cell
annotation_type!
target gene predictions
Showing 3 of 3 results
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Download
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP