Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
116
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
45
H1-hESC
45
liver
45
right lung
44
neural progenitor cell
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
40
renal cortex interstitium
40
renal pelvis
38
retina
36
left kidney
35
spinal cord
33
heart left ventricle
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
endothelial cell
32
fibroblast
32
islet of Langerhans
31
CD14-positive monocyte
30
macrophage
29
adipose tissue
28
hepatocyte
26
MCF-7
24
smooth muscle cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
foreskin keratinocyte
22
pericyte cell
21
adipocyte
21
natural killer cell
21
pancreas
21
regulatory T cell
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
19
foreskin fibroblast
19
keratinocyte
19
mesenchymal stem cell
19
ovary
19
tibial nerve
18
HFFc6
18
body of pancreas
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
heart right ventricle
18
thyroid gland
18
transverse colon
17
cardiac muscle cell
17
embryonic stem cell
17
muscle of trunk
16
HepG2
16
chorionic villus
16
fibroblast of cardiac tissue
16
pancreatic ductal cell
16
retinal pigment epithelial cell
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
H9
15
T-helper 1 cell
15
astrocyte
15
coronary artery
15
fibroblast of lung
15
layer of hippocampus
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
EndoC_BH1
14
T-helper 17 cell
14
T-helper 2 cell
14
caudate nucleus
14
endocrine pancreas
14
osteoblast
14
prostate gland
13
Peyer's patch
13
bronchial epithelial cell
13
neurosphere
13
pancreatic beta cell
13
right atrium auricular region
13
skeletal muscle satellite cell
13
tibial artery
12
aorta
12
excitatory neuron
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pancreatic acinar cell
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
left renal pelvis
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic alpha cell
11
pancreatic delta cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
right renal cortex interstitium
10
skin fibroblast
10
substantia nigra
10
temporal lobe
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
diffuse intrinsic pontine glioma
9
esophagus
9
hepatic stellate cell
9
liposarcoma
9
omental fat pad
9
parathyroid adenoma
9
putamen
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
ascending aorta
8
cerebellum
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
fibroblast cell line
8
frontal cortex
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
subcutaneous adipose tissue
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
organ_slims!
thymus
files.file_type!
tsv
month_released!
August, 2017
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP