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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
cell line
1
in vitro differentiated cells
Biosample term
81
kidney
42
right kidney
40
renal cortex interstitium
40
renal pelvis
36
left kidney
23
epithelial cell of proximal tubule
21
glomerular endothelial cell
13
glomerular visceral epithelial cell
12
bronchial epithelial cell
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
11
right renal cortex interstitium
10
kidney tubule cell
9
HEK293
8
kidney glomerular epithelial cell
8
renal cortical epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
5
ACHN
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Caki2
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
RCC 7860
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
renal cell carcinoma
4
G401
4
cortex of kidney
4
kidney connecting tubule epithelial cell
3
HEK293T
3
S-shaped body
3
club cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
metanephros
2
renal connecting tubule
2
renal principal cell
2
ureteric bud
1
left kidney
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
bronchial goblet cell
1
epithelial cell of distal tubule
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
Organ
5
kidney
0
bronchus
Life stage
3
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
macs
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
tongue
Showing 5 of 5 results
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Download
FileSet
DSR155SVZ
released
Annotation file set
: Candidate regulatory elements for BSS01481 renal cell carcinoma from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR881RBC
released
Annotation file set
: Target gene predictions for BSS01481 renal cell carcinoma from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887WYK
released
Annotation file set
: Chromatin states for BSS01481 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR283ABW
released
Annotation file set
: Histone modifications annotation for Kidney Carcinoma,_Renal_Cell from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002SLX
released
Annotation file set
: Accessible chromatin annotation for Kidney Carcinoma, Renal Cell from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP