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Schema
Citing CMDGA
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Annotation type
2
accessible chromatin
2
target gene predictions
1
gene expression
Annotation Category
2
Target gene links
1
Gene expression levels
Annotation type Category
1
ATAC-seq
1
scRNA-seq
1
snATAC-seq
Available data
2
bed bed3+
1
tsv
1
txt
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
11
endothelial cell
9
pericyte cell
7
kidney
7
smooth muscle cell
6
hepatocyte
4
endothelial cell of hepatic sinusoid
4
fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD8-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
colon epithelial cell
3
macrophage
3
pancreatic delta cell
2
astrocyte
2
blood vessel smooth muscle cell
2
cortical cell of adrenal gland
2
enteric smooth muscle cell
2
gabaergic neuron
2
glutamatergic neuron
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
memory B cell
2
natural killer cell
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic ductal cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
type B pancreatic cell
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
1
B-1 B cell
1
B-2 B cell
1
CD4-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
T-helper 17 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of proximal tubule
1
fat cell
1
fibroblast of cardiac tissue
1
foveolar cell of stomach
1
glial cell
1
glomerular endothelial cell
1
granular cell of epidermis
1
inflammatory macrophage
1
intestinal tuft cell
1
kidney connecting tubule epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
leukocyte
1
luteal cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte
1
melanocyte
1
mesenchymal stem cell
1
mesothelial cell
1
microglial cell
1
monocyte
1
myoepithelial cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
peptic cell
1
plasma cell
1
plasmacytoid dendritic cell
1
regular atrial cardiac myocyte
1
regulatory T cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
schwann cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
thyroid follicular cell
1
type I cell of adrenal cortex
1
type I pneumocyte
1
type II cell of adrenal cortex
1
undifferentiated ESC (H9 cell line)
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Life stage
1
adult
Date released
1
August, 2021
1
January, 2021
1
November, 2021
Software used
1
abc
1
cicero
1
r
1
seurat
Lab
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
1
AMP
1
ENCODE
1
T1D
RFA
AMP
1
AMP2
1
ENCODE3
1
T1D
organ_slims!
ureter
award.rfa!
AMP
Showing 3 of 3 results
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D