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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
73
brain
26
MCF-7
22
caudate nucleus
18
substantia nigra
16
cerebellum
16
frontal cortex
16
layer of hippocampus
16
mammary gland epithelial cell
15
putamen
14
temporal lobe
12
Ammon's horn
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
choroid plexus epithelial cell
10
mammary epithelial cell
10
pituitary stalk
9
cingulate gyrus
8
SK-N-MC
8
fibroblast of mammary gland
8
globus pallidus
8
midbrain
8
myoepithelial cell of mammary gland
7
BE(2)-C
7
T47D
7
amygdala
7
hypothalamus
7
luminal epithelial cell of mammary gland
7
nucleus accumbens
6
Brodmann (1909) area 46
6
Daoy
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cerebellum (Hemisphere)
6
medulla oblongata
6
middle frontal gyrus
6
pons
5
cardiac fibroblast
5
A172
5
M059J
5
brain microvascular endothelial cell
5
cerebellar cortex
4
H54
4
U-87 MG
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
medulloblastoma
3
MCF 10A
3
dorsolateral prefrontal cortex
3
prefrontal cortex
2
hippocampal neuron
2
mammary gland
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
1
brain
0
mammary gland
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
organ_slims!
ureter
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Download
FileSet
DSR416XCR
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Neuron (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP