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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
38
ChIP-seq
10
DNase-seq
5
ATAC-seq
3
snATAC-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
1
pCHi-C
1
scRNA-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
5
primary cell
Biosample term
21
retina
20
pigmented layer of retina
16
monocyte
15
CD14-positive monocyte
10
neural progenitor cell
10
pituitary stalk
9
EndoC_BH1
9
pericyte cell
7
adipocyte
7
endothelial cell
7
hepatocyte
7
kidney
6
dendritic cell
6
embryonic stem cell
6
glutamatergic neuron
6
islet of Langerhans
6
retinal pigment epithelial cell
6
smooth muscle cell
5
CD4-positive helper T cell
5
CD8-positive, alpha-beta T cell
5
SGBS preadipocytes
5
chondrocyte
5
coronary artery
5
liver
4
adipose tissue
4
astrocyte
4
endothelial cell of hepatic sinusoid
4
fibroblast
3
B cell
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
colon epithelial cell
3
gabaergic neuron
3
keratinocyte
3
memory B cell
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic ductal cell
3
subcutaneous adipose tissue
3
type B pancreatic cell
2
BJAB cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
cortical cell of adrenal gland
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enteric smooth muscle cell
2
gamma-delta T cell
2
heart left ventricle
2
luminal epithelial cell of mammary gland
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
oligodendrocyte
2
pancreas
2
pancreatic beta cell
2
plasma cell
2
regulatory T cell
2
right atrium auricular region
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
spleen
2
stomach
2
thoracic aorta
2
tibial artery
2
tibial nerve
2
trophoblast cell
2
type II pneumocyte
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
B cell, CD19-positive
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Heart fetal (cardiac muscle cell)
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
Liver fetal (hepatocyte)
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac endothelial cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
ciliated cell
1
club cell
1
colon goblet cell
1
common myeloid progenitor, CD34-positive
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
erythroblast
1
excitatory neuron
1
fat cell
1
fibroblast of arm
1
fibroblast of cardiac tissue
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
foveolar cell of stomach
1
gastrocnemius medialis
1
glomerular visceral epithelial cell
1
granular cell of epidermis
1
heart
1
hippocampal neuron
1
iPS DF 19.11
1
immature natural killer cell
1
induced pluripotent stem cell
1
intestinal tuft cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
lower motor neuron
1
luteal cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
mesenchymal stem cell
1
mesendoderm
1
mesothelial cell
1
microglial cell
1
microglial cell/astrocyte
1
muscle of leg
1
muscle of trunk
1
myeloid dendritic cell
1
myoepithelial cell
1
myotube
1
naive t cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
non keratinizing barrier epithelial cell
1
non-neuronal cell
1
oligodendrocyte precursor cell
1
omental fat pad
1
ovary
1
pancreatic alpha cell
Date released
2
May, 2020
2
May, 2021
1
November, 2021
Software used
3
abc
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
organ_slims!
urinary bladder
Showing 5 of 5 results
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP